DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and AT5G50120

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_199823.1 Gene:AT5G50120 / 835077 AraportID:AT5G50120 Length:388 Species:Arabidopsis thaliana


Alignment Length:529 Identity:100/529 - (18%)
Similarity:166/529 - (31%) Gaps:214/529 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRASLLPENNFLVSS 86
            |||:.|:..:  |.||..||.:.||..  .||:.                           |..:
plant    41 ISSLTLAGKR--LYTGSNDGVVRLWNA--NTLET---------------------------LAEA 74

  Fly    87 SENGEMCTWDLTDGKCMEAV-----KLPQVH----TQIQSYHTANSEDVRLFCIG--YYAEIMVM 140
            |.||::.|.:...|..::::     ||...|    .::...:....|||     |  .|..:..|
plant    75 SSNGDVITGERGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDV-----GGKKYMHLATM 134

  Fly   141 DPFSLEVIYVLSSK--------VKPDWISAIHVLR--PMRRKDDVVLAITTTGTVKVWTLTGNEN 195
            ...|......|..|        .|..|:..:..:.  .:.|...::.:::...|:|:|..|    
plant   135 PTISDRFAKCLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTT---- 195

  Fly   196 KHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGG 260
                        :.:||.:.|                      :|.|..:....::      :.|
plant   196 ------------DFKCLESFT----------------------NAHDDAINAVALS------ENG 220

  Fly   261 DFIT--SD-RVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRDAPY-LYYVL--QHAGDKVLSC 319
            |..|  || |:.:|                  .|..:.::|.:...: |..:|  .::|...|: 
plant   221 DIYTGSSDQRIKVW------------------RKNINEENVKKKRKHSLVAILSEHNSGINALA- 266

  Fly   320 PPAMKLLQGAGGQHNLLR-GDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKPHVCTSLVEAWS 383
                  |.|..|  :||. |.|:|.|.||...                                 
plant   267 ------LSGTNG--SLLHSGGSDGSILVWERD--------------------------------- 290

  Fly   384 IMDPPPVGILDQLSRITESPVKL--TSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQ 446
              |...:.::..|...|||.:.|  .|.|..           .||     |.:||.:.     |.
plant   291 --DGGDIVVVGMLRGHTESVLCLAVVSDILC-----------SGS-----ADKTVRLW-----KC 332

  Fly   447 NFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKS--HLLSGGIDFAVCLWDLYSGSLLHRFCVHA 509
            :..|:....:|.||.|.|.||........:.:::  |:.|||:|..|.:|               
plant   333 SAKDYSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVKVW--------------- 382

  Fly   510 GEITQLLVP 518
                |:|||
plant   383 ----QVLVP 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 13/40 (33%)
WD40 <22..202 CDD:475233 38/200 (19%)
WD40 repeat 68..107 CDD:293791 6/43 (14%)
WD40 repeat 118..152 CDD:293791 7/35 (20%)
WD40 repeat 160..204 CDD:293791 5/45 (11%)
WD40 repeat 212..251 CDD:293791 4/38 (11%)
WD40 repeat 406..459 CDD:293791 11/54 (20%)
WD40 453..>597 CDD:475233 18/68 (26%)
WD40 repeat 513..555 CDD:293791 4/6 (67%)
WD40 repeat 560..596 CDD:293791
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
AT5G50120NP_199823.1 WD40 <27..384 CDD:441893 96/524 (18%)
WD40 repeat 42..86 CDD:293791 17/74 (23%)
WD40 repeat 91..135 CDD:293791 8/48 (17%)
WD40 repeat 169..204 CDD:293791 7/50 (14%)
WD40 repeat 211..254 CDD:293791 10/66 (15%)
WD40 repeat 262..302 CDD:293791 13/83 (16%)
WD40 repeat 308..330 CDD:293791 8/37 (22%)
WD40 repeat 350..382 CDD:293791 9/31 (29%)
Blue background indicates that the domain is not in the aligned region.

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