DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and AT3G18950

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_188525.1 Gene:AT3G18950 / 821427 AraportID:AT3G18950 Length:473 Species:Arabidopsis thaliana


Alignment Length:384 Identity:73/384 - (19%)
Similarity:124/384 - (32%) Gaps:150/384 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ISSVFLSDDQFTLVTGCYDGQICLWQVE-------------PT-----TLKMSPR---------- 58
            :.::.::.|. .:.||..||:|.:|:..             ||     |..::|:          
plant   179 VKAIVITGDN-RIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKN 242

  Fly    59 CLLVGHSAPVLCLVRASLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTANS 123
            .|.:.|...|.||   ||..|...|.|.|.:..:..|.|:|.||:|:::             |:.
plant   243 VLKIRHYDAVSCL---SLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQ-------------AHD 291

  Fly   124 EDVRLFCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVW 188
            :.:.....|:                                       ||::...:..||:|||
plant   292 DAINTVAAGF---------------------------------------DDLLFTGSADGTLKVW 317

  Fly   189 --TLTGNENKHAEPIYENESKEIRCLNAITMNC------CAQNQRTVLLVCTKYWQ----IYDAG 241
              .|.|...||.  :.....|:...:.|:.:|.      |..:..||     .:|:    :...|
plant   318 KRELQGKGTKHF--LVNVLMKQENAVTALAVNITAAVVYCGSSDGTV-----NFWEGQKYLSHGG 375

  Fly   242 D-----FTVLCSVIAPARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRD 301
            .     ..|||...|.:.....|.|    ..:.:|...|.|     ..:|:         ||:.|
plant   376 TLRGHRLAVLCLAAAGSLVLSGGAD----KNICVWRRNGDG-----SHSCL---------SVLMD 422

  Fly   302 APYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDS---------EGYISVWNVPE 351
                     |.|.  :.|..|::    ..|:.:..:||.         :..:.||.|.|
plant   423 ---------HVGP--VKCLTAVE----DDGEGHREKGDQKWIVYSGSLDKSVKVWRVTE 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 12/68 (18%)
WD40 <22..202 CDD:475233 41/209 (20%)
WD40 repeat 68..107 CDD:293791 15/38 (39%)
WD40 repeat 118..152 CDD:293791 2/33 (6%)
WD40 repeat 160..204 CDD:293791 11/45 (24%)
WD40 repeat 212..251 CDD:293791 10/53 (19%)
WD40 repeat 406..459 CDD:293791
WD40 453..>597 CDD:475233
WD40 repeat 513..555 CDD:293791
WD40 repeat 560..596 CDD:293791
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
AT3G18950NP_188525.1 WD40 130..463 CDD:475233 70/379 (18%)
WD40 repeat 179..245 CDD:293791 11/66 (17%)
WD40 repeat 253..288 CDD:293791 14/37 (38%)
WD40 repeat 294..330 CDD:293791 12/76 (16%)
WD40 repeat 341..378 CDD:293791 7/41 (17%)
WD40 repeat 384..406 CDD:293791 6/25 (24%)
WD40 repeat 427..462 CDD:293791 5/38 (13%)
Blue background indicates that the domain is not in the aligned region.

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