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Protein Alignment Rbcn-3B and Apaf1

DIOPT Version :9

Sequence 1:	NP_001284797.1	Gene:	Rbcn-3B / 31155	FlyBaseID:	FBgn0023510	Length:	1525	Species:	Drosophila melanogaster
Sequence 2:	NP_076469.1	Gene:	Apaf1 / 78963	RGDID:	620575	Length:	1249	Species:	Rattus norvegicus

Alignment Length:	653	Identity:	121/653 - (18%)
Similarity:	199/653 - (30%)	Gaps:	244/653 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 LWGPT-APTHCISSVFLSDDQFTLVTGC-YDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
            ::|.| :.|||   .|..||:  |:..| .||.:.||.|.....|.|
  Rat   739 MFGHTNSVTHC---RFSPDDE--LLASCSADGTLKLWDVRSANEKKS------------------ 780

  Fly    75 SLLPENNFLVSSSENGE-------MCTWDLTDGKCMEAVK----LPQVHTQ--IQSYHTANSEDV 126
              :....|.:||.:..|       .|:|.....:.:.|.|    |..:||.  :...||.:...:
  Rat   781 --INVKRFFLSSEDPPEDVEVIVKCCSWSADGDRIIVAAKNKVLLLDIHTSGLLTEIHTGHHSTI 843

  Fly   127 RLFCIGYYAEIMV--MDPFSLEVIYVLSSKVKP-------DWISAIHVLRP-----MRRKDDVVL 177
            :......|..:.|  :..:.:| ::.:.|:||.       .|:..: :..|     :...||
  Rat   844 QYCDFSPYDHLAVIALSQYCVE-LWNIDSRVKVADCRGHLSWVHGV-MFSPDGSSFLTASDD--- 903

  Fly   178 AITTTGTVKVWTLTGNENKHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGD 242
                 .|::||. |....|::..:.:.|...:...|.: |.....|.|.:.|:..|..||....:
  Rat   904 -----QTIRVWE-TRKVCKNSAIVLKQEIDVVFQENEM-MVLAVDNIRGLQLIAGKTGQIDYLPE 961

  Fly   243 FTVLCSVIAPARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRDAPYLYY 307
            ..|.|..::|..|....||           :||...:.:||.|.:..:...|.|:|
  Rat   962 AQVSCCCLSPHLEYVAFGD-----------EEGAIKIIELPNNRVFSSGIGHKKAV--------- 1006

  Fly   308 VLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKP 372
              :|              :|.......|:....:..|.|||   ...:....|||.|
  Rat  1007 --RH--------------IQFTADGKTLISSSEDSVIQVWN---WQTEEYVFLQAHQ-------- 1044

  Fly   373 HVCTSLVEAWSIMDPPPVGILDQLSRITESPVKLTSSIYLPQQSRLVIGREDGSI----VIVPAT 433
                                            :......|.:.|||:....||::    ||....
  Rat  1045 --------------------------------ETVKDFRLLRDSRLLSWSFDGTVKVWNVITGRI 1077

  Fly   434 Q--------TVMMQLLVGIKQNFSD---------W------PSHQILYGHRGRVNCLLCPSMIHS 475
            :        ||:...:......||.         |      |.|: |.||...|.|        |
  Rat  1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFELPSPLHE-LKGHNSCVRC--------S 1133

  Fly   476 RYEKSHLL--SGGIDFAVCLWDLYSGSLLHRFC----------VHAGEITQLLVPPESCSPRILK 528
            .:....:|  :|..:..:.:|::..|.||| .|          .|.|.:|.:...|
  Rat  1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLH-LCAPISIEEGTATHGGWVTDVCFSP--------- 1188

  Fly   529 CICSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDR 593
                             :||.:..|..:|      ||                  |.:.||...:
  Rat  1189 -----------------DRKMLVSAGGYL------KW------------------WNVVTGESSQ 1212

  Fly   594 VLH 596
            ..:
  Rat  1213 TFY 1215

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.