DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and Skic8

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_075680.1 Gene:Skic8 / 66317 MGIID:1917493 Length:305 Species:Mus musculus


Alignment Length:286 Identity:62/286 - (21%)
Similarity:101/286 - (35%) Gaps:60/286 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 LRGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRIT 400
            |.|...|.:||.....:|:...|.|.|.               :..|.:.:.      .|:..|.
Mouse    60 LEGHQLGVVSVDISHTLPIAASSSLDAH---------------IRLWDLENG------KQMKSID 103

  Fly   401 ESPVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQILYGHRGRVN 465
            ..||...:..:.|....|..|...|.:.|.....        |.|:...|.....||        
Mouse   104 AGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVES--------GKKEYSLDTRGKFIL-------- 152

  Fly   466 CLLCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCI 530
                 |:.:|. :..:|.||.||..:.::|:.:|.|||....||..|..|...|:|      :.:
Mouse   153 -----SIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS------QLL 205

  Fly   531 CSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLIVGCSDGSVYVWQMET------- 588
            .:.:.|..:.:..:|........|.|...|:.:.:.|.|...:...||.||.||.:.|       
Mouse   206 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTF 270

  Fly   589 -GHLDR---VLHGMLAEEVLSACDEQ 610
             .|.|:   |.:.....:::|..|:|
Mouse   271 FDHQDQVWGVKYNGNGSKIVSVGDDQ 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791
WD40 <22..202 CDD:475233
WD40 repeat 68..107 CDD:293791
WD40 repeat 118..152 CDD:293791
WD40 repeat 160..204 CDD:293791
WD40 repeat 212..251 CDD:293791
WD40 repeat 406..459 CDD:293791 10/52 (19%)
WD40 453..>597 CDD:475233 37/154 (24%)
WD40 repeat 513..555 CDD:293791 5/41 (12%)
WD40 repeat 560..596 CDD:293791 13/46 (28%)
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
Skic8NP_075680.1 WD40 <13..302 CDD:441893 62/286 (22%)
WD 1 14..57
WD40 repeat 19..62 CDD:293791 1/1 (100%)
WD 2 62..101 10/59 (17%)
WD40 repeat 68..105 CDD:293791 9/57 (16%)
WD 3 104..143 9/46 (20%)
WD40 repeat 110..146 CDD:293791 7/43 (16%)
WD 4 146..187 14/54 (26%)
WD40 repeat 152..188 CDD:293791 13/49 (27%)
WD 5 188..227 8/44 (18%)
WD40 repeat 193..229 CDD:293791 6/41 (15%)
WD 6 230..269 11/38 (29%)
WD40 repeat 236..271 CDD:293791 9/34 (26%)
WD 7 272..305 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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