DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and Wdr7

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_076465.1 Gene:Wdr7 / 66031 RGDID:619836 Length:1488 Species:Rattus norvegicus


Alignment Length:1602 Identity:654/1602 - (40%)
Similarity:959/1602 - (59%) Gaps:191/1602 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVSTNLVVPVVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHS 65
            |...:||:|:||||..||||||||:.|:||..|:||||:|||||||.:. ..|:::||.||.||:
  Rat     1 MAGNSLVLPIVLWGRKAPTHCISSILLTDDGGTIVTGCHDGQICLWDLS-EELEVNPRALLFGHT 64

  Fly    66 APVLCLVRASLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYH--TANSEDVRL 128
            |.:.||.:|....:..:.||:|.|||||.||:.||:|:|..||...||.||.|.  ..|..:.||
  Rat    65 AAITCLSKACASGDKQYTVSASANGEMCLWDVNDGRCIEFTKLACTHTGIQFYQFSVGNQREGRL 129

  Fly   129 FCIGYYAEIMVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGN 193
            .|.|:|.||:|:|..||||:|.|.||:.|||||::.::|..|.::|.|:|::.||.:|||.:|..
  Rat   130 LCHGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIRSHRTQEDTVVALSVTGILKVWIVTSE 194

  Fly   194 EN--KHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARER 256
            .:  :..|||:|.|||.|.|.|..:::.||..||::|:||:|||:::||||:::|||..:...:.
  Rat   195 ISGLQDTEPIFEEESKPIYCQNCQSLSFCAFTQRSLLVVCSKYWRVFDAGDYSLLCSGPSEDGQT 259

  Fly   257 WQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHS---KSVVRDAPYLYYVLQHAGDK-VL 317
            |.||||:::|:|::||:.|:.|:|||||:|:|.:..|.|   |:|....|.:.:.|....|: ::
  Rat   260 WTGGDFVSADKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHSLLDQKDRELV 324

  Fly   318 SCPPAMKLLQGAGGQ-HNLL-RGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKPHVCTSLVE 380
            .|||..:...|.... |.|| :|||.|.:|:||:.::        ..||.....||...|.||.:
  Rat   325 ICPPVTRFFYGCKEYLHKLLIQGDSSGRLSIWNIADI--------ADKQEANEGLKTTTCISLQD 381

  Fly   381 AWSIMDPPPVGILDQLSRITES--PVKLTSSIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVG 443
            |:..:.|.|.||:||||.|..|  |:|:|:|:|:|...|||.|||||||:|||||||.::|||.|
  Rat   382 AFDKLKPCPAGIIDQLSVIPNSNEPLKVTASVYIPAHGRLVCGREDGSIIIVPATQTAIVQLLQG 446

  Fly   444 IKQNFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVH 508
            .......||.|:.|.|||.:|.|||.|..:.:||::.:|:|||:||:|.:||::||.:.|.||||
  Rat   447 EHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARYDQRYLISGGVDFSVIIWDIFSGEMKHIFCVH 511

  Fly   509 AGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLI 573
            .|||||||||||:||.|:..|:|||||||||.|:||:|:||:.||||||||:..|||||.||:|:
  Rat   512 GGEITQLLVPPENCSARVQHCVCSVASDHSVGLLSLREKKCIMLASRHLFPIQVIKWRPSDDYLV 576

  Fly   574 VGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGGGGGSNGASASEMGMANPAVH 638
            |||:||||.||||:||.|||...|:.|.|:|:||||              ...|:...:::|||:
  Rat   577 VGCTDGSVCVWQMDTGALDRCAMGITAVEILNACDE--------------AVPAAVDSLSHPAVN 627

  Fly   639 FFRGLKSRNMNAIR----HATQRGITQLQQLQGHNQGNFDFLMKHRSNPLVIQGLRTNPKDAESH 699
            ..:.:..|::.|::    |..|...|.|...:..::||   |.|:..|.|::|.::||..|.:.|
  Rat   628 LKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKGN---LPKYSHNSLMVQAIKTNLTDPDIH 689

  Fly   700 ILFFDIEGLIFELHSEEYAQMTPATLESLGVHLQNPKDGKSMHLDASKKIGDFFNKVKNKAVDVE 764
            :||||:|.||.:|.:||.::...|.:....:...:....|.......|:....|.:||       
  Rat   690 VLFFDVEALIIQLLTEEASRPNTALISPENLQKASGSSDKGGSFLTGKRAAVLFQQVK------- 747

  Fly   765 KILKDKDKHGLVQKFKEKTEIVEKKVQAKVESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQL 829
            :.:|:..|..|:.:.:::.|::.          |:..|...|.:..|||..:.:|....|:.|:|
  Rat   748 ETIKENIKEHLLDEEEDEEEVMR----------QRREESDPEYRASKSKPLTLLEYNLTMDTAKL 802

  Fly   830 LLSLLHSWGLDPHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTWQNNYAIPPGIQLPS-S 893
            .:|.||:|||:..||::|..|||:|:|...:|:|:||:.|:|||:||.:  |.|....:|..: :
  Rat   803 FMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSRGGHMSLMLPGY--NQAAGKLLQAKAEA 865

  Fly   894 SKKRPLPEELQRLEHLTAVFTSRLHWELSTTLTTNHILALVAMSNTLLSMSAASFLPDSEKHKKL 958
            .:|.|..|.:.:     ..:|      :|..:||.|:|::::::|||:||:.|:|:.|..| |..
  Rat   866 GRKGPATESVGK-----GTYT------VSRAVTTQHLLSIISLANTLMSMTNATFIGDHMK-KGP 918

  Fly   959 QRLAQRTDSTLSNEEEREELMAHHI-SQIKHA-------------------------------WS 991
            .|..:.....||...:.....::.: .|||.|                               ||
  Rat   919 TRPPRPGTPDLSKARDSPPASSNIVQGQIKQAAAPVSARSAADHSGSASASPALRTCFLVNEGWS 983

  Fly   992 LLATHHCFLLPDKIEALEPKKFKRPQVEMMVKRWQHHCIEIREAAQQILLGELTRMGKKGRKQLV 1056
            .||..||.:|||   .|...||:.|.:||:.:|||..|:|:|||||.:||.||.|:.:.|||:.:
  Rat   984 QLAAMHCVMLPD---LLGLGKFRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIEQAGRKETI 1045

  Fly  1057 ESWAQYLPLY-THT-EPIVGAQQQLALISQPASGGAGSGSGGNGGVGVGVSGGGGAGSGSGPGGS 1119
            ::||.|||.| .|. .|.|.|:....:.:.|                          ..|||...
  Rat  1046 DTWAPYLPQYMDHVISPGVTAEAMQTMAAAP--------------------------DASGPEAK 1084

  Fly  1120 VPGGDAHQDEDYEEEEEEI----------IRKPSSLSELKRKQTTAVILLGVIGAEFGQDISQES 1174
            |      |:|:::..:::|          ::|.|:..|.:|||.||::||||||||||.:|  |.
  Rat  1085 V------QEEEHDLVDDDITTGCLSSVPQMKKMSTSYEERRKQATAIVLLGVIGAEFGAEI--EP 1141

  Fly  1175 PNHRGSISMATGANLTSGVAGGERRKSSVVEGFGIAN-----NLARLTSMALAHLLYAPPSPKLP 1234
            |.                :....|..|.:.||||:.:     :|||.|..||..||..|||||||
  Rat  1142 PK----------------LLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLLLQPPSPKLP 1190

  Fly  1235 QYTPLRRAAIDLLGRGFTVWEPYLDVSKVLLGLLEISCEG-KAVPNLNYKLPLTPQADACRTARH 1298
            .::.:||.||||:||||||||||:|||.||:||||:..:. |.:.|:...|||:|.||:.|:|||
  Rat  1191 PHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITMGLPLSPAADSARSARH 1255

  Fly  1299 ALRLIATARPAAFITTMAREVARYNTM---QQNAQSINTPLTQSVLHKAKGEILQCVEMLIDKMQ 1360
            ||.|||||||.|||||:|:||.|:..:   .|:.|||:|    :.|.:||||||:.:|:||:||.
  Rat  1256 ALSLIATARPPAFITTIAKEVHRHTALAANTQSQQSIHT----TTLARAKGEILRVIEILIEKMP 1316

  Fly  1361 SEIAGLLVEVMDIALHCVDGNELKNRGLAELCPAICKFNQISHCAQTRRIAVGANSGNLAIYELR 1425
            :::..||||||||.::|::|:.:|.:||.|..||||:|..:|:..::.||||||..|::|:|::|
  Rat  1317 TDVVDLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERSHRIAVGARHGSVALYDIR 1381

  Fly  1426 QNKCQMIPAHTHPITSLAFSPDGKYLVSYSCAENRLSFWQTSTGMFG-LGQ----SQTRCTKGYS 1485
            ..|||.|..|..|||:::|:|||:||.:||..::.:||||.:|.:.| :|.    .|.||.|.|.
  Rat  1382 TGKCQTIHGHKGPITAVSFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLRCIKTYQ 1446

  Fly  1486 TAPIPDVS--RLNPMRLAKLVWINNRTVTLMLADGSETRFNV 1525
            ..|:...|  ..|.:|||:|:|.:||.|.||..||.|.||.|
  Rat  1447 VPPVQPASPGSHNALRLARLIWTSNRNVILMAHDGKEHRFMV 1488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 25/42 (60%)
WD40 <22..202 CDD:475233 86/183 (47%)
WD40 repeat 68..107 CDD:293791 17/38 (45%)
WD40 repeat 118..152 CDD:293791 16/35 (46%)
WD40 repeat 160..204 CDD:293791 16/45 (36%)
WD40 repeat 212..251 CDD:293791 18/38 (47%)
WD40 repeat 406..459 CDD:293791 29/52 (56%)
WD40 453..>597 CDD:475233 90/143 (63%)
WD40 repeat 513..555 CDD:293791 29/41 (71%)
WD40 repeat 560..596 CDD:293791 24/35 (69%)
GvpP <735..816 CDD:444004 15/80 (19%)
WD40 <1408..>1469 CDD:441893 30/60 (50%)
WD40 repeat 1439..1466 CDD:293791 13/26 (50%)
Wdr7NP_076465.1 WD40 <16..189 CDD:441893 86/173 (50%)
WD 1 17..56 24/39 (62%)
WD40 repeat 22..62 CDD:293791 23/40 (58%)
WD 2 62..104 19/41 (46%)
WD40 repeat 68..109 CDD:293791 19/40 (48%)
WD40 repeat 114..153 CDD:293791 18/38 (47%)
WD 3 156..199 16/42 (38%)
WD40 repeat 162..208 CDD:293791 16/45 (36%)
WD 4 324..366 15/49 (31%)
WD40 repeat 393..461 CDD:293791 37/67 (55%)
WD 5 404..443 23/38 (61%)
WD40 407..>594 CDD:475233 115/186 (62%)
WD 6 462..507 21/44 (48%)
WD40 repeat 468..522 CDD:293791 30/53 (57%)
WD 7 558..597 28/38 (74%)
WD40 repeat 563..589 CDD:293791 17/25 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 761..781 4/29 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 911..947 6/36 (17%)
WD 8 1349..1388 19/38 (50%)
WD40 repeat 1354..1390 CDD:293791 16/35 (46%)
WD40 <1364..>1424 CDD:441893 30/59 (51%)
WD 9 1390..1430 18/39 (46%)

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