DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbcn-3B and Wdr72

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_001028672.2 Gene:Wdr72 / 546144 MGIID:3583957 Length:1114 Species:Mus musculus


Alignment Length:1210 Identity:304/1210 - (25%)
Similarity:527/1210 - (43%) Gaps:297/1210 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
            |.|||..||.|.|:::.::|||.|:|||..:||:|||.:.| .||:|.:.||.||||.|.||.||
Mouse     8 VALWGRKAPPHSITAIMITDDQQTIVTGSQEGQLCLWSLSP-ELKISAKELLFGHSASVTCLARA 71

  Fly    75 SLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTA--NSEDVRLFCIGYYAEI 137
            ....:..::||::||||||.|:::.|:|:|...||..||.|..||.:  .:.:..|.|.|.|.::
Mouse    72 RDFSKQPYVVSAAENGEMCMWNVSSGQCVEKTSLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDV 136

  Fly   138 MVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGNEN--KHAEP 200
            :|:|..:|.|::..:|...|||:..:.::..:|.::|.:|.::.||.:|||.|:.:.|  :..:.
Mouse   137 LVLDAGTLAVLHTFTSLQSPDWMKCMCIVHSVRIQEDSLLVVSITGELKVWDLSSSINSIQEKQD 201

  Fly   201 IYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITS 265
            ::|.|||.:...|..|:..|...:|.:|:|.:|.|:|||..||::|.:.::...:.:.||:.:.:
Mouse   202 VHEKESKFLDSFNCQTIRFCPYTERLLLVVFSKCWKIYDYCDFSLLWTEVSRDGQFFAGGEVLAA 266

  Fly   266 DRVMLWTDEGKGYLYKL----------------------PAN-------------C---IPDNKE 292
            .|:::||::|..|:|:|                      ||:             |   :.:||.
Mouse   267 HRILVWTEDGHSYIYQLLNRWAQMGATLRTFSGLSKCVCPADGGVLKGTVYPHLLCSTSVEENKS 331

  Fly   293 FHSKSVVRDAPYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNI 357
            .|            :|:.:..::.   .|..|:         |..|:..|.|::|::|:||:...
Mouse   332 LH------------FVMGYMNERK---EPFYKV---------LFSGEVSGRITLWHIPDVPISKF 372

  Fly   358 SILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITES--------------PVKLTS 408
                  ...||.:      .:...|::.|.     .|:...:::|              ...:||
Mouse   373 ------DGSPREI------PITTTWTLQDN-----FDKHQMVSQSITDHFSGSRDEVGMTATITS 420

  Fly   409 SIYLPQQSRLVIGREDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQILYGHRGRVNCLLCPSMI 473
            |.|:|...:|:.|.|||:|.|..|.......||.| .....|.|.|.:|.||...|..||.|..:
Mouse   421 SEYIPNLDKLICGCEDGTIFITKALNAAKAGLLEG-DSLLKDSPCHTLLRGHHQSVTSLLYPHNL 484

  Fly   474 HSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICSVASDHS 538
            .|:.::|.::||.....|.|||:::..:||.|.:.||.:|:||:.||:......:.:|.|..|||
Mouse   485 ASKLDQSWMVSGDRGSYVILWDIFTEEILHTFFLEAGPVTRLLMSPENLKRSDGQILCCVCGDHS 549

  Fly   539 VTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEV 603
            |.|:.|:.|:|:..|.:|||||..|:|.|:::||||||:|.|||:|::|||.|:|...|..|..:
Mouse   550 VALLHLEGRRCLLRARKHLFPVRMIRWHPVENFLIVGCTDDSVYIWEIETGTLERHETGERARII 614

  Fly   604 LSACDEQAEDGGSGGGGGSNGASASEMGMANPAV------HFFRGLKSRNMNAIRHATQRGITQL 662
            |:..|:                  :::..:.|.:      |..:.::.::.|:            
Mouse   615 LNCGDD------------------AQLIRSEPTLSVASETHKHKSIEQKSSNS------------ 649

  Fly   663 QQLQGHNQGNFDFLMKHRSNPLVIQGLRTNPK----DAES-------------------HILFFD 704
                            |:..|:....::....    ||.|                   |:|.||
Mouse   650 ----------------HQPGPVPCPSVQLESSCKVADASSVPRPFNVLPVKTKWSHIGFHVLLFD 698

  Fly   705 IEGLIFELHSEEYAQMTP--------------ATLESLGVHL-QNPKDGKSMHLDA-SKKIGDFF 753
            :|.|:..|.....:.:.|              :|:|...:.: :|.....|:..:| :|..||  
Mouse   699 LENLVELLLPTPLSDVDPSGSFYGGDILRRAKSTVEKKTLTIRRNKASCSSLQTEAQAKPSGD-- 761

  Fly   754 NKVKNKAVDVEKILKDKDKHGLVQKFKEKTEIVEKKVQAKVESLQKAVEPHEEQQDLKSKIASKM 818
                      ..:|.|.     ..||.|:...:::  |.|::|.:||          ..|...|:
Mouse   762 ----------SLVLGDS-----TSKFSEENNGIKR--QKKMKSSKKA----------HPKPPRKV 799

  Fly   819 EVTHVMEVAQLLLSLLHSWGLDPHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTW----- 878
            :.:..:::|:|.||.:..||:|..||.:|...|.:|:...|:|.|:.|.....||:||.|     
Mouse   800 DASLTIDMAKLFLSCILPWGVDKDLDSLCTRHLSILKLQGPVSLGLASNEDLFSLMLPGWDACST 864

  Fly   879 -QNNYAIPPGIQLPSSSKKRPLPEELQRLEHLTAVFTSRLHWELSTTLTTNHILALVAMSNTLLS 942
             ...|:   |:.|.|           :::..|::.:|:.|..:.............|..|:.::.
Mouse   865 EMKEYS---GVNLCS-----------RKVLDLSSKYTATLLHQTGIPRGLESHCDSVQQSDAIVY 915

  Fly   943 MSAASFLPDSEKHKKLQRLAQRTDSTLSNE--EEREELMAHHISQIKHAWSLLATHHCFLLPDKI 1005
            :.:..||.:...:..|. ||...|.....|  ..:.......|..|...:.              
Mouse   916 LLSRLFLVNKLVNMPLD-LACEIDRPFKMETVHSKARFPGSDILNISSFYG-------------- 965

  Fly  1006 EALEPK----KFKRPQVEM----MVKRWQHHCIEIREAAQQILLGELTRMGKKGRKQLVES---- 1058
               .||    :.:.|:.::    ::..|:...:::.||.|.:||.|:.:..|..|...|.|    
Mouse   966 ---HPKNGGNECRAPEADLSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLRNTPVSSQPDP 1027

  Fly  1059 -----------------WAQYL---------PLYTHTEPI 1072
                             |.:.|         ||.|...|:
Mouse  1028 VAEHSICERMQISAKMEWTEELELQYVGKSSPLKTSVSPV 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 20/42 (48%)
WD40 <22..202 CDD:475233 69/183 (38%)
WD40 repeat 68..107 CDD:293791 17/38 (45%)
WD40 repeat 118..152 CDD:293791 10/35 (29%)
WD40 repeat 160..204 CDD:293791 10/45 (22%)
WD40 repeat 212..251 CDD:293791 14/38 (37%)
WD40 repeat 406..459 CDD:293791 20/52 (38%)
WD40 453..>597 CDD:475233 61/143 (43%)
WD40 repeat 513..555 CDD:293791 16/41 (39%)
WD40 repeat 560..596 CDD:293791 20/35 (57%)
GvpP <735..816 CDD:444004 16/81 (20%)
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
Wdr72NP_001028672.2 WD40 <3..>191 CDD:441893 75/183 (41%)
WD 1. /evidence=ECO:0000255 15..54 19/39 (49%)
WD40 repeat 20..60 CDD:293791 19/40 (48%)
WD 2. /evidence=ECO:0000255 60..102 20/41 (49%)
WD40 repeat 66..107 CDD:293791 17/40 (43%)
WD40 repeat 112..151 CDD:293791 11/38 (29%)
WD40 repeat 160..206 CDD:293791 11/45 (24%)
WD 3. /evidence=ECO:0000255 160..197 10/36 (28%)
WD 4. /evidence=ECO:0000255 327..373 14/75 (19%)
WD40 <413..613 CDD:441893 81/200 (41%)
WD 5. /evidence=ECO:0000255 413..452 13/38 (34%)
WD40 repeat 419..470 CDD:293791 20/51 (39%)
WD 6. /evidence=ECO:0000255 470..515 15/44 (34%)
WD40 repeat 475..516 CDD:293791 14/40 (35%)
WD 7. /evidence=ECO:0000255 566..605 23/38 (61%)
WD40 repeat 571..597 CDD:293791 15/25 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 634..658 4/51 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 749..798 16/77 (21%)
Blue background indicates that the domain is not in the aligned region.

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