DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and CG1523

DIOPT Version :9

Sequence 1:NP_001284797.1 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_651635.2 Gene:CG1523 / 43400 FlyBaseID:FBgn0039601 Length:621 Species:Drosophila melanogaster


Alignment Length:651 Identity:128/651 - (19%)
Similarity:198/651 - (30%) Gaps:202/651 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRASLLPE 79
            |.|.|..::.:...|::. ..||..|..:.||.:.....|:.   :|.|||..|..:..:|   :
  Fly    87 PDAHTDSVNCIKFFDERL-FATGSDDFTVALWDLRNMKQKLR---VLHGHSNWVKNIEYSS---K 144

  Fly    80 NNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQ-IQSYHTANSEDVRLFCI--GYYAEIMVMD 141
            :..||||..:|.:.|||:........:.....|.. :.....:.:.|..:.|.  ||   ||::.
  Fly   145 DKLLVSSGFDGSIFTWDINSQTEQGLISQRVFHASGLMRCRISPTGDKLVLCTSGGY---IMIIH 206

  Fly   142 PFSLEVIY--------------VLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTG 192
            ...|..::              .|..:..|......||....::|:.|.|.....          
  Fly   207 HLDLTTLHKDLCGFRPGIYRLMQLGEQYIPQAAKYDHVFSKRQKKNRVELVTDFP---------- 261

  Fly   193 NENKHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQ-IYDAGDFTVLC----SVIAP 252
             ||..||.|...:         |..:||....|.|.......|. |:|..:..|..    ..:.|
  Fly   262 -ENNDAEMIMALQ---------IHPHCCCMLTRNVSCDEQSEWTCIHDINEEPVRSEDEQDEVEP 316

  Fly   253 ARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVL 317
            ..:|.:....:.| |..|...:.:..:...|.         .::..:|.:....:.|.::|    
  Fly   317 QPKRKRVSTTLAS-RSSLNESQDQDTVGLTPR---------QARRPLRVSSVQVFQLDNSG---- 367

  Fly   318 SCPPAMKLLQGAGGQHN---LLRGDS-----------------------------EGYISVWNVP 350
                     .|.|...|   |.|.||                             .||..|:.:.
  Fly   368 ---------AGRGASDNPSVLTRSDSFIPDIWAAEVTVQERAIRQNRARVSNNHVSGYNFVYAIS 423

  Fly   351 E--VPLDNI--SILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITESPVKLTSSIY 411
            .  :||..:  :.|......||||              ..|||.. .:|.|..:.|....:||..
  Fly   424 SGVLPLRQLGANSLMGSSTSPRPL--------------TTPPPTE-SNQSSSSSSSSSSSSSSSS 473

  Fly   412 LPQQS----RLVIG-----------------REDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQ 455
            ....|    ||.||                 :|:|..::|.|.:.:........|..|...|.  
  Fly   474 SSNNSDTTVRLEIGNRLRLRSFNSPVTTPTFKENGHSILVNAKKLLYYAAETNTKPGFIKEPG-- 536

  Fly   456 ILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPE 520
              :...|||.|        |.|.....|.|           ||                     |
  Fly   537 --FSADGRVVC--------SPYGNGVRLFG-----------YS---------------------E 559

  Fly   521 SCSPRILKCICSVASDHSVTLVSLQERKCVTLA--SRHLFPVVTIKWRPLDDFLIVGCSDGSVYV 583
            .|        |......:...|..:.||.|.||  :.|...|:..|:.|.:..|:.||:.|.| .
  Fly   560 DC--------CDYPKCQAFEEVKSKPRKLVELAKITEHQDVVLCAKFSPREPLLVTGCNGGEV-T 615

  Fly   584 W 584
            |
  Fly   616 W 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_001284797.1 WD40 <11..>204 CDD:225201 44/205 (21%)
WD40 repeat 20..63 CDD:293791 8/42 (19%)
WD40 <22..202 CDD:295369 40/196 (20%)
WD40 repeat 68..107 CDD:293791 10/38 (26%)
WD40 repeat 118..152 CDD:293791 7/49 (14%)
WD40 repeat 160..204 CDD:293791 10/43 (23%)
WD40 repeat 212..251 CDD:293791 9/43 (21%)
WD40 repeat 406..459 CDD:293791 14/73 (19%)
WD40 <449..>607 CDD:225201 30/138 (22%)
WD40 453..>597 CDD:295369 29/134 (22%)
WD40 repeat 513..555 CDD:293791 9/43 (21%)
WD40 repeat 560..596 CDD:293791 9/25 (36%)
WD40 <1395..>1469 CDD:225201
WD40 <1399..1495 CDD:295369
WD40 repeat 1439..1466 CDD:293791
CG1523NP_651635.2 WD40 43..235 CDD:295369 33/157 (21%)
WD40 <45..>218 CDD:225201 32/140 (23%)
WD40 repeat 51..87 CDD:293791 128/651 (20%)
WD40 repeat 95..129 CDD:293791 7/37 (19%)
WD40 repeat 136..174 CDD:293791 10/40 (25%)
WD40 repeat 181..210 CDD:293791 6/31 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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