Sequence 1: | NP_001284797.1 | Gene: | Rbcn-3B / 31155 | FlyBaseID: | FBgn0023510 | Length: | 1525 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001014201.1 | Gene: | Wdsub1 / 362137 | RGDID: | 1359296 | Length: | 476 | Species: | Rattus norvegicus |
Alignment Length: | 528 | Identity: | 104/528 - (19%) |
---|---|---|---|
Similarity: | 179/528 - (33%) | Gaps: | 143/528 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 457 LYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDL-------YSGSLLHRFCVH------ 508
Fly 509 AGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLI 573
Fly 574 VGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGG---SGGGGGS-----------NG 624
Fly 625 ASASEMGMANPAVHFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQG--------NF----DFLM 677
Fly 678 KHRSN------PLVI-----QGLRTNPKDAESHILFFDIEGLIFELHS----EEY---AQMTPAT 724
Fly 725 LESLGVHLQNPKDGKSMHLDASKKIGDFFNKVKN-----KAVDVEKILKDKDKHGLVQKF----- 779
Fly 780 --KEKTEIVEKKV--QAKVESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSLLHSWGLD 840
Fly 841 PHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTW---------QNNYAIPPGIQLPSSSKK 896
Fly 897 RPLPEELQ 904 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rbcn-3B | NP_001284797.1 | WD40 | <11..>204 | CDD:225201 | |
WD40 repeat | 20..63 | CDD:293791 | |||
WD40 | <22..202 | CDD:295369 | |||
WD40 repeat | 68..107 | CDD:293791 | |||
WD40 repeat | 118..152 | CDD:293791 | |||
WD40 repeat | 160..204 | CDD:293791 | |||
WD40 repeat | 212..251 | CDD:293791 | |||
WD40 repeat | 406..459 | CDD:293791 | 1/1 (100%) | ||
WD40 | <449..>607 | CDD:225201 | 35/162 (22%) | ||
WD40 | 453..>597 | CDD:295369 | 33/152 (22%) | ||
WD40 repeat | 513..555 | CDD:293791 | 7/41 (17%) | ||
WD40 repeat | 560..596 | CDD:293791 | 11/35 (31%) | ||
WD40 | <1395..>1469 | CDD:225201 | |||
WD40 | <1399..1495 | CDD:295369 | |||
WD40 repeat | 1439..1466 | CDD:293791 | |||
Wdsub1 | NP_001014201.1 | WD40 | 4..309 | CDD:238121 | 67/339 (20%) |
WD 1 | 10..47 | 8/44 (18%) | |||
WD40 repeat | 16..52 | CDD:293791 | 7/43 (16%) | ||
WD 2 | 52..91 | 10/44 (23%) | |||
WD40 repeat | 57..93 | CDD:293791 | 10/41 (24%) | ||
WD 3 | 95..134 | 11/48 (23%) | |||
WD40 repeat | 101..136 | CDD:293791 | 10/36 (28%) | ||
WD 4 | 137..176 | 9/39 (23%) | |||
WD40 repeat | 143..177 | CDD:293791 | 8/34 (24%) | ||
WD 5 | 178..228 | 9/60 (15%) | |||
WD40 repeat | 183..236 | CDD:293791 | 11/63 (17%) | ||
WD 6 | 237..276 | 6/39 (15%) | |||
WD40 repeat | 242..266 | CDD:293791 | 1/23 (4%) | ||
WD 7 | 279..318 | 5/38 (13%) | |||
WD40 repeat | 284..308 | CDD:293791 | 3/23 (13%) | ||
SAM_WDSUB1 | 328..399 | CDD:188904 | 17/86 (20%) | ||
U-box | 404..476 | CDD:398320 | 13/75 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG4155 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |