Protein Alignment Rbcn-3B and Wdsub1

DIOPT Version :10

• Sequence 1: NP_569960.2
• Gene: Rbcn-3B / 31155
• FlyBaseID: FBgn0023510
• Length: 1525
• Species: Drosophila melanogaster
• Sequence 2: NP_001014201.1
• Gene: Wdsub1 / 362137
• RGDID: 1359296
• Length: 476
• Species: Rattus norvegicus
• Alignment Length: 528
• Identity: 104/528 - (19%)
• Similarity: 179/528 - (33%)
• Gaps: 143/528 - (27%)

  Fly   457 LYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDL-------YSGSLLHRFCVH------ 508
            |..|...|:|....|.:        |.:..:|..:.|:.|       :|....|.:.||
  Rat     8 LADHGDDVSCCAFSSTL--------LATCSLDKTIRLYSLSDFAELPHSPLKFHTYAVHCCSFSP 64

  Fly   509 AGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFPVVTIKWRPLDDFLI 573
            :|.:.      .|||......:.|..|.|::|::......          ||....:.|...:|.
  Rat    65 SGHVL------ASCSTDGTTVLWSAHSGHTLTVLEQPGGS----------PVRVCCFSPDSTYLA 113

  Fly   574 VGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGG---SGGGGGS-----------NG 624
            .|.:||||.:|...:..|.|.  |.:.:..|.|| ..:.|||   :|..||.           :.
  Rat   114 SGAADGSVVLWNAHSYKLYRC--GSVKDSSLVAC-AFSPDGGLLVTGSSGGDLTVWDDRMRCLHS 175

  Fly   625 ASASEMGMANPAVHFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQG--------NF----DFLM 677
            ..|.::|:.      .....|:.::...|.     .||.:|....|.        :|    .|.:
  Rat   176 EKAHDLGIT------CCSFSSQPLSGGEHG-----LQLYRLASCGQDCEIKLWVVSFTRVLGFEL 229

  Fly   678 KHRSN------PLVI-----QGLRTNPKDAESHILFFDIEGLIFELHS----EEY---AQMTPAT 724
            |:||.      |::.     .|........:..::.:|| |....||:    ..|   ....|.|
  Rat   230 KYRSTLSGHCAPVLACAFSHDGQMLASGSVDKSVIIYDI-GTQSVLHTLTQHTRYVTTCAFAPNT 293

  Fly   725 LESLGVHLQNPKDGKSMHLDASKKIGDFFNKVKN-----KAVDVEKILKDKDKHGLVQKF----- 779
            |......:....:.....|:...:.|...:::|:     ...||.|.|:.:....||..|
  Rat   294 LLLATGSMDKTVNIWQFDLETPCQAGSVSDQLKHFIEDWSEEDVSKWLRAQGLEDLVDIFRTNNI 358

  Fly   780 --KEKTEIVEKKV--QAKVESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSLLHSWGLD 840
              ||...:.::.:  ..|:|||           .|:||:...::     |:...:.||  |.|:.
  Rat   359 DGKELLHLTKESLAGDMKIESL-----------GLRSKVLRSID-----ELRTRMESL--SSGIP 405

  Fly   841 PHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTW---------QNNYAIPPGIQLPSSSKK 896
            ...  :|.....|::..|..|.|.    .|....:.:|         ..|.|:|..:..|:.:.|
  Rat   406 DEF--ICPITRELMKDPVIASDGY----SYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLK 464

  Fly   897 RPLPEELQ 904
            ..:...|:
  Rat   465 MAINRWLE 472

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbcn-3B	NP_569960.2	WD40 repeat	20..63	CDD:293791
		WD40	<22..202	CDD:475233
		WD40 repeat	68..107	CDD:293791
		WD40 repeat	118..152	CDD:293791
		WD40 repeat	160..204	CDD:293791
		WD40 repeat	212..251	CDD:293791
		WD40 repeat	406..459	CDD:293791	1/1 (100%)
		WD40	453..>597	CDD:475233	33/152 (22%)
		WD40 repeat	513..555	CDD:293791	7/41 (17%)
		WD40 repeat	560..596	CDD:293791	11/35 (31%)
		GvpP	<735..816	CDD:444004	19/94 (20%)
		WD40	<1408..>1469	CDD:441893
		WD40 repeat	1439..1466	CDD:293791
Wdsub1	NP_001014201.1	WD40	<3..311	CDD:441893	67/341 (20%)
		WD 1	10..47		8/44 (18%)
		WD40 repeat	16..52	CDD:293791	7/43 (16%)
		WD 2	52..91		10/44 (23%)
		WD40 repeat	57..93	CDD:293791	10/41 (24%)
		WD 3	95..134		11/48 (23%)
		WD40 repeat	101..136	CDD:293791	10/36 (28%)
		WD 4	137..176		9/39 (23%)
		WD40 repeat	143..177	CDD:293791	8/34 (24%)
		WD 5	178..228		9/60 (15%)
		WD40 repeat	183..236	CDD:293791	11/63 (17%)
		WD 6	237..276		6/39 (15%)
		WD40 repeat	242..266	CDD:293791	1/23 (4%)
		WD 7	279..318		5/38 (13%)
		WD40 repeat	284..308	CDD:293791	3/23 (13%)
		SAM_WDSUB1	328..399	CDD:188904	17/86 (20%)
		U-box	404..476	CDD:398320	13/75 (17%)