DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbcn-3B and Dcaf10

DIOPT Version :10

Sequence 1:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_001101405.1 Gene:Dcaf10 / 313242 RGDID:1304730 Length:563 Species:Rattus norvegicus


Alignment Length:371 Identity:80/371 - (21%)
Similarity:136/371 - (36%) Gaps:109/371 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VVLWGPTAPTH----------CISSVFLSDDQFTLVTGCYDG-QICLWQVEPTTLKMSPRCLLVG 63
            |:|:.|.:..|          |::::...|::  |...|.|. .|.||.:.....|:   |.|.|
  Rat   196 VLLFDPISSKHIKTLSEAHEDCVNNIRFLDNR--LFATCSDDTTIALWDLRKLNTKV---CTLHG 255

  Fly    64 HSAPVLCLVRASLLPENN--FLVSSSENGEMCTWD---LTDGKCMEAVKLPQVHTQIQSYHTANS 123
            |::.|     .::..:.|  .||:|..:|.:..||   .|:..|        .|.:.  :||...
  Rat   256 HTSWV-----KNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGC--------PHKKF--FHTRFL 305

  Fly   124 EDVRLF--C--------IGYYAEIMVMD-PFSLEVIYVLSSKVKPDWISAIHVLRPMR--RKDDV 175
            ..:||.  |        .||...:..:| ..||||             .:..:||..|  ...|:
  Rat   306 MRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEV-------------GSYPILRARRTTSSSDL 357

  Fly   176 VLAITTTGTVKVWTLTG---------NENKHAEPIYENESKEIR-CLNAITMNCCAQNQRTVLLV 230
            ..:.:::|:    .::|         :..||.....:.|....| .|..:|.....:..|.   .
  Rat   358 TTSSSSSGS----RVSGSPCHHNDSNSTEKHVSRASQREGVSPRNSLEVLTPEVPGERDRG---N 415

  Fly   231 CTKYWQIYDAGDFTVL-CSVIAPARE-----RWQGGDFI------TSDRVMLWTDE---GKGYLY 280
            |....|::..|..|:| ||.....:|     .:|.|..:      .|.|:..:.:|   |:||:.
  Rat   416 CITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIK 480

  Fly   281 KLPANCI-PDNKEFHSKSVVRDAPYLYYVLQHAGDK----VLSCPP 321
            :|   |. ||.:...|       |:.|.:.....||    ::.|.|
  Rat   481 EL---CFSPDGRMISS-------PHGYGIRLLGFDKQCSELVDCLP 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 12/53 (23%)
WD40 <22..202 CDD:475233 43/207 (21%)
WD40 repeat 68..107 CDD:293791 10/43 (23%)
WD40 repeat 118..152 CDD:293791 12/44 (27%)
WD40 repeat 160..204 CDD:293791 8/54 (15%)
WD40 repeat 212..251 CDD:293791 10/39 (26%)
WD40 repeat 406..459 CDD:293791
WD40 453..>597 CDD:475233
WD40 repeat 513..555 CDD:293791
WD40 repeat 560..596 CDD:293791
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
Dcaf10NP_001101405.1 WD40 <168..323 CDD:475233 33/146 (23%)
WD40 repeat 176..211 CDD:293791 4/14 (29%)
WD40 repeat 218..254 CDD:293791 9/40 (23%)
WD40 repeat 260..286 CDD:293791 7/30 (23%)
WD40 521..559 CDD:197651
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.