Sequence 1: | NP_001284797.1 | Gene: | Rbcn-3B / 31155 | FlyBaseID: | FBgn0023510 | Length: | 1525 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001129191.1 | Gene: | Wdr72 / 300834 | RGDID: | 1563550 | Length: | 1104 | Species: | Rattus norvegicus |
Alignment Length: | 1217 | Identity: | 321/1217 - (26%) |
---|---|---|---|
Similarity: | 538/1217 - (44%) | Gaps: | 292/1217 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 VVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
Fly 75 SLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTA--NSEDVRLFCIGYYAEI 137
Fly 138 MVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGNEN--KHAEP 200
Fly 201 IYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITS 265
Fly 266 DRVMLWTDEGKGYLYKL----------PAN-------------CIPDNKEFHSKSVVRDAPYLYY 307
Fly 308 VLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKP 372
Fly 373 HVCTSLVEAWSIMDPPPVGILDQLSRITES--------------PVKLTSSIYLPQQSRLVIGRE 423
Fly 424 DGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGID 488
Fly 489 FAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLA 553
Fly 554 SRHLFPVVTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGG 618
Fly 619 GGGSNGASASEMGMANPAV------HFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQGNFDFLM 677
Fly 678 KHRSNPLVIQGLRTNPK----DAES-------------------HILFFDIEGLIFEL------- 712
Fly 713 --------HSEEYAQMTPATLESLGVHL-QNPKDGKSMHLDASKKIGDFFNKVKNKAVDVEKILK 768
Fly 769 DKDKHGLVQKFKEKTEIVEKKVQAKVESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSL 833
Fly 834 LHSWGLDPHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTW------QNNYAIPPGIQLPS 892
Fly 893 SSKKRPLPEELQRLEHLTAVFTSRLHWELSTTLTT-------------NHILALVAMSNTLLSMS 944
Fly 945 AASFLPDSEKHKKLQRLAQRTDSTLSNEEEREEL---------MAHHISQIKHAWSLLATHHCFL 1000
Fly 1001 LPDKIEALEPKKFKRPQVEM----MVKRWQHHCIEIREAAQQILLGELTRMGKKGRKQLVESWAQ 1061
Fly 1062 YLPLYTH-------TEPIVGAQQQLAL----ISQPASGGAGSGSGGN 1097 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rbcn-3B | NP_001284797.1 | WD40 | <11..>204 | CDD:225201 | 78/196 (40%) |
WD40 repeat | 20..63 | CDD:293791 | 20/42 (48%) | ||
WD40 | <22..202 | CDD:295369 | 71/183 (39%) | ||
WD40 repeat | 68..107 | CDD:293791 | 18/38 (47%) | ||
WD40 repeat | 118..152 | CDD:293791 | 10/35 (29%) | ||
WD40 repeat | 160..204 | CDD:293791 | 11/45 (24%) | ||
WD40 repeat | 212..251 | CDD:293791 | 14/38 (37%) | ||
WD40 repeat | 406..459 | CDD:293791 | 20/52 (38%) | ||
WD40 | <449..>607 | CDD:225201 | 68/157 (43%) | ||
WD40 | 453..>597 | CDD:295369 | 63/143 (44%) | ||
WD40 repeat | 513..555 | CDD:293791 | 16/41 (39%) | ||
WD40 repeat | 560..596 | CDD:293791 | 21/35 (60%) | ||
WD40 | <1395..>1469 | CDD:225201 | |||
WD40 | <1399..1495 | CDD:295369 | |||
WD40 repeat | 1439..1466 | CDD:293791 | |||
Wdr72 | NP_001129191.1 | WD40 | <14..285 | CDD:225201 | 102/271 (38%) |
WD40 | 14..>191 | CDD:295369 | 73/177 (41%) | ||
WD40 repeat | 20..60 | CDD:293791 | 19/40 (48%) | ||
WD40 repeat | 66..107 | CDD:293791 | 18/40 (45%) | ||
WD40 repeat | 112..151 | CDD:293791 | 11/38 (29%) | ||
WD40 repeat | 159..206 | CDD:293791 | 12/46 (26%) | ||
WD40 | 338..>597 | CDD:225201 | 97/285 (34%) | ||
WD40 | 408..>596 | CDD:295369 | 81/188 (43%) | ||
WD40 repeat | 409..460 | CDD:293791 | 20/51 (39%) | ||
WD40 repeat | 465..506 | CDD:293791 | 14/40 (35%) | ||
WD40 repeat | 561..587 | CDD:293791 | 16/25 (64%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D331603at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002541 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR44099 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 5.020 |