DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbcn-3B and Wdr72

DIOPT Version :9

Sequence 1:NP_001284797.1 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_001129191.1 Gene:Wdr72 / 300834 RGDID:1563550 Length:1104 Species:Rattus norvegicus


Alignment Length:1217 Identity:321/1217 - (26%)
Similarity:538/1217 - (44%) Gaps:292/1217 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
            |.|||..||.|.|:::.::|||.|:|||..:||:|||.:.| .||:|.:.||.||||.|.||.||
  Rat     8 VALWGRKAPPHSITAIMITDDQRTIVTGSQEGQLCLWSLSP-ELKISAKELLFGHSASVTCLARA 71

  Fly    75 SLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTA--NSEDVRLFCIGYYAEI 137
            ....:..::||::||||||.||::.|:|:|...||..||.|..||.:  .:.:..|.|.|.|.::
  Rat    72 RDFSKQPYVVSAAENGEMCLWDVSSGQCVEKTTLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDV 136

  Fly   138 MVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGNEN--KHAEP 200
            :|:|..:|.|::..||...|||:..:.::..:|.::|.:|.::.||.:|||.|:.:.|  :..:.
  Rat   137 LVLDAGTLAVLHTFSSSQSPDWMKCMCIVHSVRIQEDSLLVVSVTGELKVWDLSSSINSIQEKQD 201

  Fly   201 IYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITS 265
            :||.|||.:...|..|:..|...:|.:|:|.:|.|:|||..||::|.:.::...:.:.||:.:.:
  Rat   202 VYEKESKFLDSFNCQTIRFCTYTERLLLVVFSKCWKIYDYCDFSLLWTEVSRDGQFFAGGEVLAA 266

  Fly   266 DRVMLWTDEGKGYLYKL----------PAN-------------CIPDNKEFHSKSVVRDAPYLYY 307
            .|:::||::|..|:|:|          ||:             |....:|...:|       |::
  Rat   267 HRILVWTEDGHSYIYQLLNSGLSKCMCPADGGVLKGTVYPHLLCSTSVEENKKQS-------LHF 324

  Fly   308 VLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRPLKP 372
            |:.:..::.   .|..|:         |..|:..|.|::|::|:||:...      ...||.:  
  Rat   325 VMGYMNERK---EPFYKV---------LFSGEVSGRITLWHIPDVPISKF------DGSPREI-- 369

  Fly   373 HVCTSLVEAWSIMDPPPVGILDQLSRITES--------------PVKLTSSIYLPQQSRLVIGRE 423
                .:...|::.|.     .|:...:::|              .|.:|||.|:|...:|:.|.|
  Rat   370 ----PITTTWTLQDN-----FDKHQMVSQSIADHFSGSRDEVGETVTITSSEYVPNLDKLICGCE 425

  Fly   424 DGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGID 488
            ||:|.|..|.......||.| .....|.|.|.:|.|||..|..||.|..:.|:.::|.::||...
  Rat   426 DGTIFITKALNAAKAGLLEG-GSLLKDSPCHTLLRGHRHSVTSLLYPHSLASKLDQSWMVSGDRG 489

  Fly   489 FAVCLWDLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLA 553
            ..|.|||:::..:||.|.:.||.:|:||:.||:......:.:|.|..||||.|:.|:.|:|:..|
  Rat   490 SYVILWDIFTEEILHTFFLEAGPVTRLLMSPENLKRSDGQILCCVCGDHSVALLHLEGRRCLLRA 554

  Fly   554 SRHLFPVVTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGG 618
            .:|||||.||:|.|:::||||||:|.|||:|::|||.|:|...|..|..:|:..|:         
  Rat   555 RKHLFPVRTIRWHPVENFLIVGCTDDSVYIWEIETGTLERHETGERARIILNCGDD--------- 610

  Fly   619 GGGSNGASASEMGMANPAV------HFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQGNFDFLM 677
                     :::..:.|.:      |..:.::.::.|:                           
  Rat   611 ---------AQLVRSEPTLSVASETHKHKSVEQKSSNS--------------------------- 639

  Fly   678 KHRSNPLVIQGLRTNPK----DAES-------------------HILFFDIEGLIFEL------- 712
             |...|:...||:....    ||.|                   |:|.||:|.|: ||       
  Rat   640 -HLPGPVPCPGLQLESSCQVADASSVPRPFNVLPVKTKWSHVGFHVLLFDLENLV-ELLLPTPLS 702

  Fly   713 --------HSEEYAQMTPATLESLGVHL-QNPKDGKSMHLDASKKIGDFFNKVKNKAVDVEKILK 768
                    :..:..:...:|:|...:.: :|.....|:..:|..|...            |.:|.
  Rat   703 DVDPSGSFYGSDILRRAKSTVEKKTLTIRRNKASCTSLQAEAQAKSSG------------ETLLP 755

  Fly   769 DKDKHGLVQKFKEKTEIVEKKVQAKVESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSL 833
            ...    ..||.|::..:::  |.|::|.:||          :.|.:.|::.:..:::|:|.||.
  Rat   756 GDS----TCKFSEESNGIKR--QKKMKSSKKA----------RPKPSRKVDASLTIDMAKLFLSC 804

  Fly   834 LHSWGLDPHLDKMCETRLGLLRPIVPISYGVLSKAGYMSLLLPTW------QNNYAIPPGIQLPS 892
            :..||:|..||.:|...|.:|:...|:|.|:.|.....||:||.|      ...|:   |:.|  
  Rat   805 ILPWGVDKELDSLCTRHLSILKLQGPVSLGLASNEDLFSLMLPGWDACNTEMKEYS---GVNL-- 864

  Fly   893 SSKKRPLPEELQRLEHLTAVFTSRLHWELSTTLTT-------------NHILALVAMSNTLLSMS 944
                                 .||...:||...||             ||..|| ..|:.::.:.
  Rat   865 ---------------------CSRKVLDLSNKYTTALLNQTGIPRSLENHCDAL-QQSDAIVYLL 907

  Fly   945 AASFLPDSEKHKKLQRLAQRTDSTLSNEEEREEL---------MAHHISQIKHAWSLLATHHCFL 1000
            :..||.:...:..|. ||..||.....|....::         ::.....:|:     ..|.|  
  Rat   908 SRLFLVNKLVNMPLD-LACETDRPFKMESVHNKVRFPGSDILNLSSFYGHLKN-----GRHEC-- 964

  Fly  1001 LPDKIEALEPKKFKRPQVEM----MVKRWQHHCIEIREAAQQILLGELTRMGKKGRKQLVESWAQ 1061
                         ..|:.::    ::..|:...:::.||.|..||.|:.:..|..|...|.|  |
  Rat   965 -------------HTPEADLSLLKLISCWRDQSVQVTEAIQAALLAEVQQHMKSLRDTPVRS--Q 1014

  Fly  1062 YLPLYTH-------TEPIVGAQQQLAL----ISQPASGGAGSGSGGN 1097
            ..|:..|       |...|...::|.|    .|.|......|...||
  Rat  1015 PDPVAEHSICERVQTSAKVEQAEELELQCVGTSSPLKTSVSSVKQGN 1061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_001284797.1 WD40 <11..>204 CDD:225201 78/196 (40%)
WD40 repeat 20..63 CDD:293791 20/42 (48%)
WD40 <22..202 CDD:295369 71/183 (39%)
WD40 repeat 68..107 CDD:293791 18/38 (47%)
WD40 repeat 118..152 CDD:293791 10/35 (29%)
WD40 repeat 160..204 CDD:293791 11/45 (24%)
WD40 repeat 212..251 CDD:293791 14/38 (37%)
WD40 repeat 406..459 CDD:293791 20/52 (38%)
WD40 <449..>607 CDD:225201 68/157 (43%)
WD40 453..>597 CDD:295369 63/143 (44%)
WD40 repeat 513..555 CDD:293791 16/41 (39%)
WD40 repeat 560..596 CDD:293791 21/35 (60%)
WD40 <1395..>1469 CDD:225201
WD40 <1399..1495 CDD:295369
WD40 repeat 1439..1466 CDD:293791
Wdr72NP_001129191.1 WD40 <14..285 CDD:225201 102/271 (38%)
WD40 14..>191 CDD:295369 73/177 (41%)
WD40 repeat 20..60 CDD:293791 19/40 (48%)
WD40 repeat 66..107 CDD:293791 18/40 (45%)
WD40 repeat 112..151 CDD:293791 11/38 (29%)
WD40 repeat 159..206 CDD:293791 12/46 (26%)
WD40 338..>597 CDD:225201 97/285 (34%)
WD40 408..>596 CDD:295369 81/188 (43%)
WD40 repeat 409..460 CDD:293791 20/51 (39%)
WD40 repeat 465..506 CDD:293791 14/40 (35%)
WD40 repeat 561..587 CDD:293791 16/25 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331603at33208
OrthoFinder 1 1.000 - - FOG0002541
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44099
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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