DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and WDR72

DIOPT Version :9

Sequence 1:NP_001284797.1 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_877435.3 Gene:WDR72 / 256764 HGNCID:26790 Length:1102 Species:Homo sapiens


Alignment Length:1166 Identity:322/1166 - (27%)
Similarity:548/1166 - (46%) Gaps:221/1166 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VVLWGPTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
            |.|||..||.|.|:::.::|||.|:|||..:||:|||.:. ..||:|.:.||.||||.|.||.||
Human     8 VALWGQKAPPHSITAIMITDDQRTIVTGSQEGQLCLWNLS-HELKISAKELLFGHSASVTCLARA 71

  Fly    75 SLLPENNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTA--NSEDVRLFCIGYYAEI 137
            ....:..::||::||||||.|::|:|:|||...||..||.|..||.:  .:.:..|.|.|.|.::
Human    72 RDFSKQPYIVSAAENGEMCVWNVTNGQCMEKATLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDV 136

  Fly   138 MVMDPFSLEVIYVLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTGNEN--KHAEP 200
            :::|..:|.|::...|...||||:.:.::..||.::|.:|.::..|.:|||.|:.:.|  :..:.
Human   137 LIIDAKTLAVVHSFRSSQFPDWINCMCIVHSMRIQEDSLLVVSVAGELKVWDLSSSINSIQEKQD 201

  Fly   201 IYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITS 265
            :||.|||.:..||..|:..|...:|.:|:|.:|.|::||..||::|.:.::...:.:.||:.|.:
Human   202 VYEKESKFLESLNCQTIRFCTYTERLLLVVFSKCWKVYDYCDFSLLLTEVSRNGQFFAGGEVIAA 266

  Fly   266 DRVMLWTDEGKGYLYKL----------PAN-------------C---IPDNKEFHSKSVVRDAPY 304
            .|:::||::|..|:|:|          ||:             |   :.:|||       :..|:
Human   267 HRILIWTEDGHSYIYQLLNSGLSKSIYPADGRVLKETIYPHLLCSTSVQENKE-------QSRPF 324

  Fly   305 LYYVLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNISILQAKQMPPRP 369
            :...:....:      |..|:         |..|:..|.|::|::|:||:...      ...||.
Human   325 VMGYMNERKE------PFYKV---------LFSGEVSGRITLWHIPDVPVSKF------DGSPRE 368

  Fly   370 LKPHVCTSLVEAWSIMDPPPVGILDQLSRITE--SPVKLTSSIYLPQQSRLVIGREDGSIVIVPA 432
            :......:|.:.:...|.....|:|..|.:.:  ....:|||.|:|...:|:.|.|||:|:|..|
Human   369 IPVTATWTLQDNFDKHDTMSQSIIDYFSGLKDGAGTAVVTSSEYIPSLDKLICGCEDGTIIITQA 433

  Fly   433 TQTVMMQLLVG---IKQNFSDWPSHQILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLW 494
            ......:||.|   :|    |.|.|::|.||...|..||.|..:.|:.::|.:|||.:|..|.||
Human   434 LNAAKARLLEGGSLVK----DSPPHKVLKGHHQSVTSLLYPHGLSSKLDQSWMLSGDLDSCVILW 494

  Fly   495 DLYSGSLLHRFCVHAGEITQLLVPPESCSPRILKCICSVASDHSVTLVSLQERKCVTLASRHLFP 559
            |:::..:||:|.:.||.:|.||:.||....|..:.||.|..||||.|:.|:.:.|:..|.:||||
Human   495 DIFTEEILHKFFLEAGPVTSLLMSPEKFKLRGEQIICCVCGDHSVALLHLEGKSCLLHARKHLFP 559

  Fly   560 VVTIKWRPLDDFLIVGCSDGSVYVWQMETGHLDRVLHGMLAEEVLSACDEQAEDGGSGGGGGSNG 624
            |..|||.|:::||||||:|.|||:|::|||.|:|...|..|..:|:.||:             :.
Human   560 VRMIKWHPVENFLIVGCADDSVYIWEIETGTLERHETGERARIILNCCDD-------------SQ 611

  Fly   625 ASASEMGMANPAVHFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQGNFDFLMKHRSNPLVIQGL 689
            ...|.:.:|:..:. .:.::.|:.:..    |.|......||..:...... .|....|..:..:
Human   612 LVKSVLPIASETLK-HKSIEQRSSSPY----QLGPLPCPGLQVESSCKVTD-AKFCPRPFNVLPV 670

  Fly   690 RTNPKDAESHILFFDIEGLIFELHSEEYAQMTPATLESLGVHLQNPKDGKSMHLDASKKI--GDF 752
            :|...:...|||.||:|.|: ||       :.|..|..               :|:|...  |:.
Human   671 KTKWSNVGFHILLFDLENLV-EL-------LLPTPLSD---------------VDSSSSFYGGEV 712

  Fly   753 FNKVKNKAVDVEK----ILKDKDKHG--------------LVQ-----KFKEKTEIVEKKVQAKV 794
            ..:.|:   .|||    :.|.|...|              |.|     ||.|:.:.::::.:.|:
Human   713 LRRAKS---TVEKKTLTLRKSKTACGPLSAEALAKPITESLAQGDNTIKFSEENDGIKRQKKMKI 774

  Fly   795 ESLQKAVEPHEEQQDLKSKIASKMEVTHVMEVAQLLLSLLHSWGLDPHLDKMCETRLGLLRPIVP 859
               .|.::|         |.:.|::.:..::.|:|.||.|..||:|..||.:|...|.:|:...|
Human   775 ---SKKMQP---------KPSRKVDASLTIDTAKLFLSCLLPWGVDKDLDYLCIKHLNILKLQGP 827

  Fly   860 ISYGVLSKAGYMSLLLPTWQ-------NNYAIPPGIQLPSSSKKRPLPEELQRLEHLTAVFTSRL 917
            ||.|:.......||:||.|.       .:|:   |:.|.|           :::..|:..:|:.|
Human   828 ISLGISLNEDNFSLMLPGWDLCNSGMIKDYS---GVNLFS-----------RKVLDLSDKYTATL 878

  Fly   918 HWELSTTLTTNHILALVAMSNTLLSMSAASFLPDSEKHKKLQRLAQRTDSTLSNEEEREEL--MA 980
            ..::.......:....:..|:|::.:.:..||.:...:..|: ||.|..|:...|....::  ..
Human   879 PNQVGIPRGLENNCDSLRESDTIVYLLSRLFLVNKLVNMPLE-LACRVGSSFRMESIHNKMRGAG 942

  Fly   981 HHISQIKHAWSLLATHHCFLLPDKIEALEPKKFKRPQVEM----MVKRWQHHCIEIREAAQQILL 1041
            :.|..:...:|.|..       .|.|:      ..|:.::    ::..|:...:::.||.|.:||
Human   943 NDILNMSSFYSCLRN-------GKNES------HVPEADLSLLKLISCWRDQSVQVTEAIQAVLL 994

  Fly  1042 GELTR----------------MGKKGR---KQLVE--SWAQ---------YLPLYTHTEPI 1072
            .|:.:                |.:.|.   ||::.  .|.:         .|||.|...|:
Human   995 AEVQQHMKSLGKIPVNSQPVSMAENGNCEMKQMLPKLEWTEELELQCVRNTLPLQTPVSPV 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_001284797.1 WD40 <11..>204 CDD:225201 77/196 (39%)
WD40 repeat 20..63 CDD:293791 19/42 (45%)
WD40 <22..202 CDD:295369 70/183 (38%)
WD40 repeat 68..107 CDD:293791 19/38 (50%)
WD40 repeat 118..152 CDD:293791 9/35 (26%)
WD40 repeat 160..204 CDD:293791 12/45 (27%)
WD40 repeat 212..251 CDD:293791 14/38 (37%)
WD40 repeat 406..459 CDD:293791 21/55 (38%)
WD40 <449..>607 CDD:225201 70/157 (45%)
WD40 453..>597 CDD:295369 65/143 (45%)
WD40 repeat 513..555 CDD:293791 17/41 (41%)
WD40 repeat 560..596 CDD:293791 21/35 (60%)
WD40 <1395..>1469 CDD:225201
WD40 <1399..1495 CDD:295369
WD40 repeat 1439..1466 CDD:293791
WDR72NP_877435.3 WD40 <14..296 CDD:225201 103/282 (37%)
WD 1 15..54 18/39 (46%)
WD40 repeat 20..60 CDD:293791 18/40 (45%)
WD 2 60..102 22/41 (54%)
WD40 repeat 66..107 CDD:293791 19/40 (48%)
WD40 repeat 112..151 CDD:293791 10/38 (26%)
WD40 repeat 160..206 CDD:293791 12/45 (27%)
WD 3 160..197 10/36 (28%)
WD40 repeat 213..259 CDD:293791 14/45 (31%)
WD40 repeat 267..315 CDD:293791 10/47 (21%)
WD 4 318..362 13/65 (20%)
WD40 repeat 323..352 CDD:293791 7/43 (16%)
WD 5 402..441 13/38 (34%)
WD40 <404..>596 CDD:225201 84/195 (43%)
WD40 404..>595 CDD:295369 84/194 (43%)
WD40 repeat 407..459 CDD:293791 21/55 (38%)
WD 6 459..504 17/44 (39%)
WD40 repeat 465..502 CDD:293791 13/36 (36%)
WD 7 507..552 18/44 (41%)
WD40 repeat 512..554 CDD:293791 16/41 (39%)
WD 8 555..594 24/38 (63%)
WD40 repeat 561..596 CDD:293791 20/34 (59%)
WD40 13..>191 CDD:295369 72/178 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331603at33208
OrthoFinder 1 1.000 - - FOG0002541
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44099
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
44.020

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