DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbcn-3B and Tep1

DIOPT Version :9

Sequence 1:NP_001284797.1 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster
Sequence 2:NP_033377.1 Gene:Tep1 / 21745 MGIID:109573 Length:2629 Species:Mus musculus


Alignment Length:1176 Identity:210/1176 - (17%)
Similarity:338/1176 - (28%) Gaps:510/1176 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 CISSVFLSD---DQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRASLLPENNF 82
            |..:..|:.   |||||          .|..:|.|||......|...|:|.              
Mouse  1647 CCQAPLLTQRWHDQFTL----------KWINKPQTLKGQQSLSLTMSSSPT-------------- 1687

  Fly    83 LVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQIQSYHTANSEDVRLFCIGYYAEIMVMDPFSLEV 147
            .|:.|.||:........|                                              .
Mouse  1688 AVAFSPNGQRAAVGTASG----------------------------------------------T 1706

  Fly   148 IYVLSSKVKPDW------ISAIHVLRPMRRKDDVVLAITT-TGTVKVWTLTGNENKHAEPIYENE 205
            ||:|:.|.   |      :|....:.......|..|.:|| .|.:::|.|     :|...:::.:
Mouse  1707 IYLLNLKT---WQEEKAVVSGCDGISSFAFLSDTALFLTTFDGHLELWDL-----QHGCWVFQTK 1763

  Fly   206 SKEIRCLNAITMNCCAQNQRTVLLVCT-KYWQIYD------AGDFT----VLCSVIAP-----AR 254
            :.:.:    ||..|.:.::|.:..||. .|.:::|      |..:|    :.|....|     |.
Mouse  1764 AHQYQ----ITGCCLSPDRRLLATVCLGGYLKLWDTVRGQLAFQYTHPKSLNCVAFHPEGQVVAT 1824

  Fly   255 ERWQGG-DFITSD----------------------------------RVMLWTDEGKGYLYKLPA 284
            ..|.|. .|..:|                                  .|.||..:....|...||
Mouse  1825 GSWAGSITFFQADGLKVTKELGAPGPSVCSLAFNKPGKIVAVGRIDGTVELWAWQEGARLAAFPA 1889

  Fly   285 NCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWN- 348
            .|          ..|....:|     ||||:.|:          ||         .:|...:|: 
Mouse  1890 QC----------GCVSAVLFL-----HAGDRFLT----------AG---------EDGKAQLWSG 1920

  Fly   349 ---VPEVPLDNISILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILD------QLSRITESP- 403
               .|...|.::           ||.|.:..:|....   |...||..:      ::|..::.| 
Mouse  1921 FLGRPRGCLGSL-----------PLSPALSVALNPDG---DQVAVGYREDGINIYKISSGSQGPQ 1971

  Fly   404 -----VKLTSSIYLPQQSRLVIGREDGSI--------------VIVPATQTVM-----MQLLVGI 444
                 |.:::.::| ..|.||.|.||||:              ::....:.|:     .:|:...
Mouse  1972 HQELNVAVSALVWL-SPSVLVSGAEDGSLHGWMFKGDSLHSLWLLSRYQKPVLGLAASRELMAAA 2035

  Fly   445 KQNFSD--WPS--------HQI-------LYGHRGRVNC------------------LLC----- 469
            .::|:.  ||.        |.:       |.||.|.|.|                  |||     
Mouse  2036 SEDFTVRLWPRQLLTQPHVHAVELPCCAELRGHEGPVCCCSFSPDGGILATAGRDRNLLCWDMKI 2100

  Fly   470 ---PSMIHSRYEKSH--------------LLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLV 517
               |.:||: :...|              |:|...|.:|.||:..:|..|.:|..|...::.::.
Mouse  2101 AQAPLLIHT-FSSCHRDWITGCAWTKDNILVSCSSDGSVGLWNPEAGQQLGQFSGHQSAVSAVVA 2164

  Fly   518 --------------------------------PPESCS----PR--------------------- 525
                                            |...|:    ||                     
Mouse  2165 VEEHIVSVSRDGTLKVWDHQGVELTSIPAHSGPISQCAAALEPRPGGQPGSELLVVTVGLDGATK 2229

  Fly   526 ----ILKCICSVASDHS--VTLVSLQERKCVTLAS--------------------RHLFPVVTIK 564
                :|.|.......||  ||..:..|...:.|.|                    |....:..:.
Mouse  2230 LWHPLLVCQIRTLQGHSGPVTAAAASEASGLLLTSDDSSVQLWQIPKEADDSYKPRSSVAITAVA 2294

  Fly   565 WRPLDDFLIVGCSDGSVYVWQM-----------ETGHLDRVLHGMLAEEVLSACDEQAEDGGSGG 618
            |.|....::.|...|.:.:||.           ...||  :.:...:..|||| :|...:...|.
Mouse  2295 WAPDGSMVVSGNEAGELTLWQQAKAVATAQAPGRVSHL--IWYSANSFFVLSA-NENVSEWQVGL 2356

  Fly   619 GGGSNGASASEMGMANPAVHFFRGLKSRNMNAIRHATQRGITQLQQLQGHNQGNFDFLMKHRSNP 683
            ..||...|:|        :|..|                   .||:..|                
Mouse  2357 RKGSTSTSSS--------LHLKR-------------------VLQEDWG---------------- 2378

  Fly   684 LVIQGLRTNPKDAESHILFFDIEGLIFELHSEEYAQMTPATLES-----LGVH------------ 731
             |:.||...|          |.:.||......|..:|.|.::.|     .|||            
Mouse  2379 -VLTGLGLAP----------DGQSLILMKEDVELLEMKPGSIPSSICRRYGVHSSILCTSKEYGL 2432

  Fly   732 --LQNPKDGKSMHLDASKKIGDF-----FN-----------KVKNKAVDVEKILKDKDKHGLVQK 778
              ||....|....|: .|:.|:|     ||           .:.....:.|..|......|::..
Mouse  2433 FYLQQGDSGLLSILE-QKESGEFEEILDFNLNLNNPNGSPVSITQAKPESESSLLCATSDGMLWN 2496

  Fly   779 FKEKT--------EIVEKKV-QAKVESLQKAVEPHEE----------QQDLKSKIASKMEVTHVM 824
            ..|.|        .|.:||. :.|.::|:..:.||.|          ..:||::...|:.:..|.
Mouse  2497 LSECTSEGEWIVDNIWQKKAKKPKTQTLETELSPHSELDFSIDCWIDPTNLKAQQCKKIHLGSVT 2561

  Fly   825 EVAQLLLSLLHSWGLD--------PHLDKM----CETRLGLLRPIV----PISYGVLSKAGYMSL 873
            .: .:|..||.:...|        |.:..:    ||..:..|.|.:    |:...|....|.:..
Mouse  2562 AL-HVLPGLLVTASKDRDVKLWERPSMQLLGLFRCEGPVSCLEPWMEPSSPLQLAVGDTQGNLYF 2625

  Fly   874 LLPTWQ 879
            |  :|:
Mouse  2626 L--SWE 2629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbcn-3BNP_001284797.1 WD40 <11..>204 CDD:225201 34/192 (18%)
WD40 repeat 20..63 CDD:293791 13/44 (30%)
WD40 <22..202 CDD:295369 33/189 (17%)
WD40 repeat 68..107 CDD:293791 5/38 (13%)
WD40 repeat 118..152 CDD:293791 2/33 (6%)
WD40 repeat 160..204 CDD:293791 9/44 (20%)
WD40 repeat 212..251 CDD:293791 11/49 (22%)
WD40 repeat 406..459 CDD:293791 16/88 (18%)
WD40 <449..>607 CDD:225201 51/308 (17%)
WD40 453..>597 CDD:295369 46/292 (16%)
WD40 repeat 513..555 CDD:293791 13/124 (10%)
WD40 repeat 560..596 CDD:293791 8/46 (17%)
WD40 <1395..>1469 CDD:225201
WD40 <1399..1495 CDD:295369
WD40 repeat 1439..1466 CDD:293791
Tep1NP_033377.1 TEP1 N-terminal 1 1..30
TEP1_N 1..29 CDD:283129
TEP1 N-terminal 2 31..60
TEP1_N 31..59 CDD:283129
TEP1 N-terminal 3 61..90
TEP1_N 62..89 CDD:283129
TEP1 N-terminal 4 91..120
TEP1_N 91..119 CDD:283129
TROVE 230..685 CDD:283406
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 386..412
DUF4062 917..1017 CDD:290011
NACHT 1171..1346 CDD:283404
WD 1 1420..1462
WD 2 1681..1720 12/101 (12%)
WD40 repeat 1687..1723 CDD:293791 10/98 (10%)
WD 3 1723..1761 9/42 (21%)
WD40 repeat 1729..1764 CDD:293791 8/39 (21%)
WD40 1763..2182 CDD:238121 85/472 (18%)
WD 4 1764..1803 9/42 (21%)
WD40 repeat 1769..1804 CDD:293791 9/34 (26%)
WD 5 1805..1844 8/38 (21%)
WD40 1806..2198 CDD:225201 75/441 (17%)
WD40 repeat 1811..1847 CDD:293791 7/35 (20%)
WD 6 1847..1886 4/38 (11%)
WD40 repeat 1852..1887 CDD:293791 4/34 (12%)
WD 7 1889..1930 14/74 (19%)
WD40 repeat 1895..1930 CDD:293791 11/58 (19%)
WD 8 1932..1971 8/52 (15%)
WD40 repeat 1937..2066 CDD:293791 22/132 (17%)
WD 9 1974..2013 10/39 (26%)
WD40 1979..2273 CDD:238121 51/295 (17%)
WD40 repeat 1979..2014 CDD:293791 9/35 (26%)
WD 10 2015..2054 5/38 (13%)
WD 11 2067..2106 9/38 (24%)
WD40 repeat 2072..2111 CDD:293791 8/39 (21%)
WD 12 2113..2151 9/37 (24%)
WD40 repeat 2118..2141 CDD:293791 4/22 (18%)
WD 13 2154..2191 1/36 (3%)
WD40 repeat 2159..2190 CDD:293791 0/30 (0%)
WD 14 2193..2241 6/47 (13%)
WD40 repeat 2198..2243 CDD:293791 5/44 (11%)
WD 15 2244..2282 7/37 (19%)
WD40 repeat 2250..2272 CDD:293791 4/21 (19%)
WD 16 2285..2324 7/38 (18%)
WD40 repeat 2290..2322 CDD:293791 6/31 (19%)
WD 17 2326..2362 10/38 (26%)
WD40 repeat 2330..2374 CDD:293791 14/73 (19%)
WD 18 2375..2424 15/75 (20%)
WD40 repeat 2380..2410 CDD:293791 9/39 (23%)
WD40 2408..>2625 CDD:225201 42/218 (19%)
WD40 repeat 2420..2465 CDD:293791 10/45 (22%)
WD 19 2467..2507 5/39 (13%)
WD40 repeat 2472..2495 CDD:293791 3/22 (14%)
WD40 <2534..>2602 CDD:295369 11/68 (16%)
WD 20 2555..2592 6/37 (16%)
WD 21 2594..2628 8/35 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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