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Protein Alignment Rbcn-3B and Apaf1

DIOPT Version :10

Sequence 1:	NP_569960.2	Gene:	Rbcn-3B / 31155	FlyBaseID:	FBgn0023510	Length:	1525	Species:	Drosophila melanogaster
Sequence 2:	NP_033814.2	Gene:	Apaf1 / 11783	MGIID:	1306796	Length:	1249	Species:	Mus musculus

Alignment Length:	593	Identity:	113/593 - (19%)
Similarity:	185/593 - (31%)	Gaps:	224/593 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 LWGPT-APTHCISSVFLSDDQFTLVTGC-YDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRA 74
            ::|.| :..||   .|..||:  |:..| .||.:.||.|.....:.|
Mouse   739 MFGHTNSVNHC---RFSPDDE--LLASCSADGTLRLWDVRSANERKS------------------ 780

  Fly    75 SLLPENNFLVSSSENGE-------MCTWDLTDGKCMEAVK----LPQVHTQ--IQSYHTANSEDV 126
              :....|.:||.:..|       .|:|.....|.:.|.|    |..:||.  :...||.:...:
Mouse   781 --INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843

  Fly   127 RLFCIGYYAEIMV--MDPFSLEVIYVLSSKVKP-------DWISAIHVLRP-----MRRKDDVVL 177
            :......|..:.|  :..:.:| ::.:.|::|.       .|:..: :..|     :...||
Mouse   844 QYCDFSPYDHLAVIALSQYCVE-LWNIDSRLKVADCRGHLSWVHGV-MFSPDGSSFLTASDD--- 903

  Fly   178 AITTTGTVKVWTLTGNENKHAEPIYENESKEIRCLNAI---------------TMNCCAQNQRTV 227
                 .|::||                |:|:: |.|:.               ||.....|.|.:
Mouse   904 -----QTIRVW----------------ETKKV-CKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946

  Fly   228 LLVCTKYWQIYDAGDFTVLCSVIAPARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKE 292
            .|:..|..||....:..|.|..::|..|....||           ::|...:.:||.|.:..:..
Mouse   947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD-----------EDGAIKIIELPNNRVFSSGV 1000

  Fly   293 FHSKSVVRDAPYLYYVLQHAGDKVLSCPPAMKLLQGAGGQHNLLRGDSEGYISVWNVPEVPLDNI 357
            .|.|:|           :|              :|.......|:....:..|.|||   ....:.
Mouse  1001 GHKKAV-----------RH--------------IQFTADGKTLISSSEDSVIQVWN---WQTGDY 1037

  Fly   358 SILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITESPVKLTSSIYLPQQSRLVIGR 422
            ..|||.|                                        :......|.|.|||:...
Mouse  1038 VFLQAHQ----------------------------------------ETVKDFRLLQDSRLLSWS 1062

  Fly   423 EDGSI----VIVPATQ--------TVMMQLLVGIKQNFSD---------W------PSHQILYGH 460
            .||::    ||....:        ||:...:......||.         |      |.|: |.||
Mouse  1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGH 1126

  Fly   461 RGRVNCLLCPSMIHSRYEKSHLL--SGGIDFAVCLWDLYSGSLLHRFC----------VHAGEIT 513
            .|.|.|        |.:....:|  :|..:..:.:|::..|.|||. |          .|.|.:|
Mouse  1127 NGCVRC--------SAFSLDGILLATGDDNGEIRIWNVSDGQLLHS-CAPISVEEGTATHGGWVT 1182

  Fly   514 QLLVPPES 521
            .:...|:|
Mouse  1183 DVCFSPDS 1190

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.