DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and EDEM1

DIOPT Version :10

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_055489.1 Gene:EDEM1 / 9695 HGNCID:18967 Length:657 Species:Homo sapiens


Alignment Length:497 Identity:212/497 - (42%)
Similarity:286/497 - (57%) Gaps:71/497 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 QKQYSKA----RKLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDG-------------HDTW 77
            :|:||.|    .:.::|:..|.||...||.|:.||...|||.|:.|.|             :|..
Human   115 EKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVL 179

  Fly    78 GSYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLSKRA 142
            |:|||||:|||||||.|||.:||::|.:|:...:.||:|..|.|||..||::|.|||||.:...:
Human   180 GNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDS 244

  Fly   143 GVELEPGWPCKGP------------LLRLAEDVARRLLPAFV-TNTGMPYGTVNLRYGVPKGETS 194
                      |.|            ||.:|.|:|.||||||. |.||:||..|||:.|||....:
Human   245 ----------KQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNN 299

  Fly   195 ITCTAGVGTFLIEFGTLSRLTGKTIYEDVAMKAVHALWAYRS-PIGLFGNHIDVQSGRWTALDSG 258
            .|||||.|:.|:|||.||||.|.:.:|.||.:||.|||..|| ..||.||.:::|:|.|....||
Human   300 ETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSG 364

  Fly   259 IGAGVDSLFEYLVKASVLLNRPELLELFHEARAAIDKYMRK-----------EDWYVWVGMNKGR 312
            :|||:||.:|||:|:.:|....|.||:|:.|..:|..|:|:           ...||.|.|..|:
Human   365 LGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQ 429

  Fly   313 VTLPVFQSLEAFWPGILSIIGDTEPALRTISRYIGVWKKYGFLPEFYNIAAGEASPNREVYPLRP 377
            :......||:||:||:..:|||.|.|:...:.|..:||:||.|||.||...  .:|:...|||||
Human   430 LMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQL--QAPDVLFYPLRP 492

  Fly   378 ELIESAMYLYRATGNEYLLEFGEHMLETLEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKY 442
            ||:||...||:||.|.:.|..|..:|::||...|.||||||:.:|:....|:|||||||:||.||
Human   493 ELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKY 557

  Fly   443 LYLLFDEENFLHNDGSGGELLSTEDDVCVVQAGAYIFNTEAH 484
            |||||||:|.:|..|:                 .|:|.||.|
Human   558 LYLLFDEDNPVHKSGT-----------------RYMFTTEGH 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:460241 206/475 (43%)
EDEM1NP_055489.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..94
Glyco_hydro_47 137..582 CDD:460241 205/473 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.