DRSC/TRiP Functional Genomics Resources

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Protein Alignment Edem1 and si:ch211-282j22.3

DIOPT Version :10

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_003200881.1 Gene:si:ch211-282j22.3 / 562939 ZFINID:ZDB-GENE-091113-49 Length:837 Species:Danio rerio


Alignment Length:534 Identity:209/534 - (39%)
Similarity:296/534 - (55%) Gaps:67/534 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 TLICAVLLVLLS-----------TGVSGQKQYSKARKLELREDVRRMFQHAYDGYLRHASNYDEL 66
            |..|..|:|.|:           :|..||.. :...|.|:|:.:..||.|||:.|:.:|...|||
Zfish    10 TRACGGLVVTLAALVISCPLAEVSGHDGQAM-TPEEKSEIRDQILEMFDHAYNSYMDYAYPADEL 73

  Fly    67 RPLTCDGH------------DTWGSYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINV 119
            .||:|.|.            |:.|.:||||||.||||..:....||..|.:.:...:..|.||.|
Zfish    74 MPLSCRGRVRGLEPNRGDVDDSLGKFSLTLIDTLDTLVLLNKLDEFEEAVKKIMRDVRLDNDIVV 138

  Fly   120 SVFETNIRIVGGLLSAHLLS---KRAGVELEPGWPCKGPLLRLAEDVARRLLPAFVTNTGMPYGT 181
            ||||||||::||||.||:::   |:.|..::  | .:..||.:|:::..||||||.|.:|:||..
Zfish   139 SVFETNIRVLGGLLGAHVMADVLKQRGQRMQ--W-YRDELLHMAKELGYRLLPAFNTTSGLPYPR 200

  Fly   182 VNLRYGVPK-----GETSITCTAGVGTFLIEFGTLSRLTGKTIYEDVAMKAVHALWAYRS-PIGL 240
            |||||||..     |..|.||||..||.::||..|||::|.||:|:.|.||:..||..|. ...|
Zfish   201 VNLRYGVVNPLSRTGTESDTCTACAGTLILEFAALSRMSGDTIFEEHARKAMDVLWEKRQRGSDL 265

  Fly   241 FGNHIDVQSGRWTALDSGIGAGVDSLFEYLVKASVLLNRPELLELFHEARAAIDKYMRKEDWYVW 305
            .|..|::.:|.|...|||:|||:||.:|||:||.:||.....||.|:...:||.||:.:....:.
Zfish   266 VGTVINIHNGDWVRRDSGVGAGIDSYYEYLMKAYILLGDKVYLERFNTHYSAIMKYISQPPLLLN 330

  Fly   306 VGMNKGRVTLPVF-QSLEAFWPGILSIIGDTEPALRTISRYIGVWKKYGFLPEFYNIAAGEASPN 369
            |.|:...|.:..: .||.||:||:..:.||.:||:.|......|.|::.||||.:..   |...:
Zfish   331 VHMHNPTVNVRSWMDSLLAFFPGLQVLRGDLKPAIETHEMLYQVTKQHNFLPEAFTT---EFRVH 392

  Fly   370 REVYPLRPELIESAMYLYRATGNEYLLEFGEHMLETLEFSAKTKCGYATIRNVVTHEKENRMESF 434
            ...:|||||..||..:||:|||:.|.|:.|:.::|.|...|:..||:|.:::|.|...|:||:||
Zfish   393 WGQHPLRPEFAESTYFLYKATGDPYYLKVGQSIVEKLNAHARVPCGFAAVQDVRTGTHEDRMDSF 457

  Fly   435 FLAETSKYLYLLFDEENFLHNDGSGGELLSTEDDVCVVQAGAYIFNTEAH--PMDMSALH--CC- 494
            ||||..|||||||.|::.|..|         .||        |||.||||  |:.:|...  |. 
Zfish   458 FLAEMFKYLYLLFSEKSQLPID---------IDD--------YIFTTEAHLLPVSLSTTQPSCLT 505

  Fly   495 -----HAHNEDIYT 503
                 .||.:|:::
Zfish   506 NGTEPPAHQDDLFS 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:460241 192/461 (42%)
si:ch211-282j22.3XP_003200881.1 Glyco_hydro_47 55..494 CDD:460241 192/461 (42%)
PA_EDEM3_like 642..768 CDD:239041
Blue background indicates that the domain is not in the aligned region.

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