DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and edem2

DIOPT Version :9

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001005031.1 Gene:edem2 / 448548 XenbaseID:XB-GENE-941890 Length:555 Species:Xenopus tropicalis


Alignment Length:569 Identity:306/569 - (53%)
Similarity:386/569 - (67%) Gaps:34/569 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 YPGTLICAVLLVLLSTGVSGQKQYSKARKLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDGH 74
            ||  |...:|..||....:..:..::....:.|:.|:.||.|||:.||.||..|||||||||||.
 Frog     6 YP--LYLGILGALLPGYHARDRGLTEEEMAQYRDRVKSMFYHAYNNYLDHAFPYDELRPLTCDGQ 68

  Fly    75 DTWGSYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLS 139
            |||||:|||||||||||..:||.|||:|...:|::.:|||.|:|.||||||||:|||||||||.|
 Frog    69 DTWGSFSLTLIDALDTLLIIGNVTEFQRVVNVLQDTLDFDIDVNASVFETNIRVVGGLLSAHLFS 133

  Fly   140 KRAGVELEPGWPCKGPLLRLAEDVARRLLPAFVTNTGMPYGTVNLRYGVPKGETSITCTAGVGTF 204
            ||||:||||||||.|||||:||:.||:|||||.|.||||||||||..||...||.:|||||||||
 Frog   134 KRAGLELEPGWPCTGPLLRMAEEAARKLLPAFDTATGMPYGTVNLLRGVNPTETPVTCTAGVGTF 198

  Fly   205 LIEFGTLSRLTGKTIYEDVAMKAVHALWAYRSPIGLFGNHIDVQSGRWTALDSGIGAGVDSLFEY 269
            ::||.|||||||...:|.||.:|:..||..||.|||.|||:||.:.:|.|.|:||||||||.|||
 Frog   199 IVEFATLSRLTGDPQFEMVARRALRGLWESRSDIGLVGNHVDVMTSKWVAQDAGIGAGVDSYFEY 263

  Fly   270 LVKASVLLNRPELLELFHEARAAIDKYMRKEDWYVWVGMNKGRVTLPVFQSLEAFWPGILSIIGD 334
            |||.::||...||:.:|.|...|:..:.:.:||||||.|.||.||:||||||||||||:.|::||
 Frog   264 LVKGAILLQDEELMSMFLEYNKALQNFTKYDDWYVWVQMYKGTVTMPVFQSLEAFWPGLQSLVGD 328

  Fly   335 TEPALRTISRYIGVWKKYGFLPEFYNIAAGEASPNREVYPLRPELIESAMYLYRATGNEYLLEFG 399
            ....:|:...|..||:::|.|||||:|..|.....||.|||||||||||||||:||.:..|||.|
 Frog   329 IRSGMRSFLNYYTVWRQFGGLPEFYSIPQGFTVEKREGYPLRPELIESAMYLYKATRDPILLELG 393

  Fly   400 EHMLETLEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKYLYLLFDEENFLHNDGSGGELLS 464
            ...:|::|..:|..||:|||::|..|:.:|||||||||||.||||||||.:||:|||||..:|:.
 Frog   394 RDAVESIERISKVDCGFATIKDVRDHKLDNRMESFFLAETIKYLYLLFDPDNFIHNDGSTSDLVV 458

  Fly   465 TEDDVCVVQAGAYIFNTEAHPMDMSALHCCHAHNEDIYTSLDLQRFSPRAILERSKKRQVAVQEQ 529
            |....||:.||.|:|||||||:|.:|||||                          ||..|  ||
 Frog   459 TPYGECVMGAGGYVFNTEAHPIDPAALHCC--------------------------KRDSA--EQ 495

  Fly   530 WVPQCHPENNEFFN-KEDESVQAQDSEKE-QEREQSGTSTTMAVDIEVF 576
            |  :......|||: |...:.:||....: |.|.:|..::.::...:.|
 Frog   496 W--EVEDLVREFFSIKSSSNPKAQQHRPDSQNRNKSKRTSKLSCPSQPF 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:279825 275/437 (63%)
edem2NP_001005031.1 Glyco_hydro_47 42..480 CDD:366693 275/437 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 576 1.000 Domainoid score I220
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H10075
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 1 1.000 - - oto102231
Panther 1 1.100 - - LDO PTHR45679
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4562
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.110

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