DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and edem2

DIOPT Version :9

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001292543.1 Gene:edem2 / 402801 ZFINID:ZDB-GENE-060519-1 Length:560 Species:Danio rerio


Alignment Length:487 Identity:287/487 - (58%)
Similarity:366/487 - (75%) Gaps:2/487 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LICAVLLVLLSTGVSGQKQYSKARKLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDGHDTWG 78
            :.||..|..:.:.|.| :.:::......|:.|:.||.|||:.||.:|..|||||||||||.||||
Zfish     9 IFCAAYLSPIISHVKG-RDFTEQEMSHYRDRVKSMFYHAYNSYLDNAYPYDELRPLTCDGQDTWG 72

  Fly    79 SYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLSKRAG 143
            |:|||||||||||..:||.|||:|.|.||::.:|||.|:|.||||||||:|||||||||||||||
Zfish    73 SFSLTLIDALDTLLILGNHTEFQRVATLLQDTVDFDIDVNASVFETNIRVVGGLLSAHLLSKRAG 137

  Fly   144 VELEPGWPCKGPLLRLAEDVARRLLPAFVTNTGMPYGTVNLRYGVPKGETSITCTAGVGTFLIEF 208
            :::|.||||.|||||:|||.||:|||||.|.||||||||||..||..|||.:|||||||||::||
Zfish   138 MKVEEGWPCSGPLLRMAEDAARKLLPAFQTPTGMPYGTVNLLRGVNPGETPVTCTAGVGTFILEF 202

  Fly   209 GTLSRLTGKTIYEDVAMKAVHALWAYRSPIGLFGNHIDVQSGRWTALDSGIGAGVDSLFEYLVKA 273
            .|||||||..::|:||.||:.|||..||.|||.||||||.:.:|.|.|:||||||||.||||||.
Zfish   203 STLSRLTGDPVFENVARKALRALWRTRSDIGLVGNHIDVITSKWVAQDAGIGAGVDSYFEYLVKG 267

  Fly   274 SVLLNRPELLELFHEARAAIDKYMRKEDWYVWVGMNKGRVTLPVFQSLEAFWPGILSIIGDTEPA 338
            :::|...:||.:|:|...:|..|.:.:|||:||.|:||.|::||||||||||||:.|:|||...|
Zfish   268 AIMLQDEKLLTMFYEFDKSIKNYTKFDDWYLWVQMHKGTVSMPVFQSLEAFWPGMQSLIGDISSA 332

  Fly   339 LRTISRYIGVWKKYGFLPEFYNIAAGEASPNREVYPLRPELIESAMYLYRATGNEYLLEFGEHML 403
            .::...|..||:::|.|||||:|..|.....||.|||||||||||||||:|||:...::.|...:
Zfish   333 TKSFHNYYSVWRQFGGLPEFYSIPQGYTVDKREGYPLRPELIESAMYLYKATGDPSFIQLGRDAV 397

  Fly   404 ETLEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKYLYLLFDEENFLHNDGSGGELLSTEDD 468
            |:::..::..||:||:::|..|:.:|||||||||||.||||||||.:|||||.|:..||.....|
Zfish   398 ESIDRISRVNCGFATVKDVRDHKLDNRMESFFLAETIKYLYLLFDPDNFLHNTGTEFELGGLRGD 462

  Fly   469 VCVVQAGAYIFNTEAHPMDMSALHCCHAHNED 500
             |::.||.|:|||||||:|.:|||||....:|
Zfish   463 -CILSAGGYVFNTEAHPLDPAALHCCSREQQD 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:279825 272/437 (62%)
edem2NP_001292543.1 Glyco_hydro_47 42..479 CDD:279825 272/437 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 573 1.000 Domainoid score I211
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H10075
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 1 1.000 - - oto40822
orthoMCL 1 0.900 - - OOG6_101442
Panther 1 1.100 - - LDO PTHR45679
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4562
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.920

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