DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and edem1

DIOPT Version :9

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_957483.2 Gene:edem1 / 394164 ZFINID:ZDB-GENE-040426-808 Length:628 Species:Danio rerio


Alignment Length:549 Identity:224/549 - (40%)
Similarity:300/549 - (54%) Gaps:93/549 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LSTGVSGQKQYSK-------ARKLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDG------- 73
            ||....|:.:|.:       |.|:::|...|.||...||.|::.|...|||.|:.|:|       
Zfish    90 LSFFEEGRDEYDRKYSSFPDALKVKMRAMARDMFYFGYDNYMKFAFPEDELNPIACEGRGPDVLN 154

  Fly    74 ------HDTWGSYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGL 132
                  :|..|:|||||||.||||..:||.|||.||.:|:.:.:.||:|..|.|||.||||:|.|
Zfish   155 PSNININDVLGNYSLTLIDTLDTLLVLGNVTEFHRAVKLVIDTVSFDKDSTVQVFEANIRILGSL 219

  Fly   133 LSAHLLSKRAGVELEPGWP--------CKGPLLRLAEDVARRLLPAFV-TNTGMPYGTVNLRYGV 188
            :|||:|.      .:|..|        ....||.||.|:|.||||||. |:||:||..|||:.||
Zfish   220 ISAHILL------TDPRHPFGDVGLKDYDNELLHLAHDLAVRLLPAFENTSTGIPYPRVNLKNGV 278

  Fly   189 PKGETSITCTAGVGTFLIEFGTLSRLTGKTIYEDVAMKAVHALWAYRS-PIGLFGNHIDVQSGRW 252
            |....:.|||||.|:.|:|||.||||.|.:.:|.||.:||.|||..|| ..||.||.:::|:|:|
Zfish   279 PPDSINETCTAGAGSLLVEFGILSRLIGDSTFEWVARRAVKALWKLRSNETGLLGNVVNIQTGQW 343

  Fly   253 TALDSGIGAGVDSLFEYLVKASVLLNRPELLELFHEARAAIDKYMRK-----------EDWYVWV 306
            ....||:|||:||.:|||:|:.:|....|...:|..|..:|..::|:           ...||.|
Zfish   344 VGKQSGLGAGMDSFYEYLLKSYILFGEKEDFRMFTAAYESIQSHLRRGREACNEGEGDPPLYVNV 408

  Fly   307 GMNKGRVTLPVFQSLEAFWPGILSIIGDTEPALRTISRYIGVWKKYGFLPEFYNIAAGEASPNRE 371
            .|..|::......||:||:||:..:.||.|.|:...:.|..:||::|.|||.||...  .:|:..
Zfish   409 NMFNGQIMNTWIDSLQAFFPGLQVLNGDVENAICLHAFYYAIWKRFGALPERYNWQL--QAPDVL 471

  Fly   372 VYPLRPELIESAMYLYRATGNEYLLEFGEHMLETLEFSAKTKCGYATIRNVVTHEKENRMESFFL 436
            .|||||||:||...||:||.|.:.|..|..:||:||.:.|.:|||||:.:||...||:|||||||
Zfish   472 FYPLRPELVESTYLLYQATKNPFYLHVGMDILESLEKNTKVRCGYATLHHVVDKSKEDRMESFFL 536

  Fly   437 AETSKYLYLLFDEENFLHNDGSGGELLSTEDDVCVVQAGAYIFNTEAH--PMDMSALHCCHAHNE 499
            :||.|||||||||:|.||.                 ....|||.||.|  |:|            
Zfish   537 SETCKYLYLLFDEDNPLHK-----------------SENKYIFTTEGHVVPID------------ 572

  Fly   500 DIYTSLDLQRFSPRAILERSKKRQVAVQE 528
                    |||.     |||.:.|...:|
Zfish   573 --------QRFR-----ERSWEEQFPNEE 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:279825 206/473 (44%)
edem1NP_957483.2 Glyco_hydro_47 122..571 CDD:279825 206/473 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2429
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101442
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.720

Return to query results.
Submit another query.