DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and ZC506.1

DIOPT Version :9

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_509671.3 Gene:ZC506.1 / 181210 WormBaseID:WBGene00013919 Length:931 Species:Caenorhabditis elegans


Alignment Length:957 Identity:257/957 - (26%)
Similarity:424/957 - (44%) Gaps:223/957 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDGH------------DTWGSYSLTLIDALDT 90
            |.:|:::...||.|.|:.|:.:|...|||.||:|.|.            |..|::|:||:|:|||
 Worm    26 KKKLQKEAYDMFMHGYNSYMNYAFPADELMPLSCKGRIRGVTPSRGDVDDVLGNFSVTLLDSLDT 90

  Fly    91 LATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLSKRAGVELEPGWPCK-- 153
            |..|....||.:|..|:.:.:.||.|..|||||||||::|||:|||:|::.    ::..:|.:  
 Worm    91 LVVMNELDEFEKAIDLVIKHVRFDSDHVVSVFETNIRVLGGLISAHVLAEL----VKEKYPNRLT 151

  Fly   154 ---GPLLRLAEDVARRLLPAFVTNTGMPYGTVNLRYGVP---KGETSITCTAGVGTFLIEFGTLS 212
               ..||::|.:|..||||||.|.:|:|:..:||::|:.   |.:.. ||||..||.::||..|:
 Worm   152 TYDNQLLKMATEVGNRLLPAFNTTSGLPFSRINLKHGMQDHLKRQKD-TCTACGGTMILEFAALT 215

  Fly   213 RLTGKTIYEDVAMKAVHALWAYR-SPIGLFGNHIDVQSGRWTALDSGIGAGVDSLFEYLVKASVL 276
            .|||..|||..|.||:..||..| ....|.|..::|.||.||..:||||||:||.:||.:||.:|
 Worm   216 SLTGDPIYEKKARKAMDFLWQQRHRSSDLMGTVLNVHSGDWTRRESGIGAGIDSYYEYTLKAYIL 280

  Fly   277 LNRPELLELFHEARAAIDKYMRKEDWYVWVGMNKGRV-TLPVFQSLEAFWPGILSIIGDTEPALR 340
            |.....|:.|::...||.:|:.|...:|.|.|::..| |.....||.|||||:..:.||.:.|:.
 Worm   281 LGDESYLDRFNKHYEAIKRYINKGPIFVDVHMHRPTVATRGFMDSLLAFWPGLQVLKGDVKEAIE 345

  Fly   341 TISRYIGVWKKYGFLPEFYNIAAGEASPNREVYPLRPELIESAMYLYRATGNEYLLEFGEHMLET 405
            .......|.:|:.||||.:   ..:...:...:|:|||.:||..:|||||.:.:.|...:.::::
 Worm   346 MHEMLFQVIQKHKFLPEAF---THDFQVHWAEHPIRPEFVESTYFLYRATKDPHYLHVAKQIMDS 407

  Fly   406 LEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKYLYLLFDEENFLHNDGSGGELLSTEDDVC 470
            :....|..||:|.::::.|..||::||||.|:||.||||::|                 |:.:..
 Worm   408 INKYVKVPCGFAALKDIRTMVKEDQMESFVLSETFKYLYMIF-----------------TDPEDL 455

  Fly   471 VVQAGAYIFNTEAHPMDMSALHCCHAHNEDIYTSLDLQRFSPRAILERSKKRQVAVQEQWVPQCH 535
            :.....|:..||||.:.:|.     .|.|.|.     .:.:||.::.|:.:.|   |:.:|  | 
 Worm   456 MFDPDHYVLTTEAHFLPLSI-----GHKEKIE-----NKINPRRMILRADEPQ---QKNYV--C- 504

  Fly   536 PENNEFFNKEDESVQAQDSEKEQERE-------QSGTSTTMAVDIEVFDEFQQPAGDLLV----- 588
             .|...|.|  ...:.::::..:||.       ::|.|...|....:..|  .||..:..     
 Worm   505 -ANPIDFTK--LPTEREEAQLIRERTKIMLGELRNGASAGGAAPGNMICE--SPADRIRAWAFSS 564

  Fly   589 SNFEQIRE------------ERELNESLHRNVVARNQL-------TVSDLDEFFAQRRESFASAS 634
            ||.|.:::            :..|:.| |::|.|.:.|       .:.::..:..|..:|..:..
 Worm   565 SNQEHVKQLVMMGIELITLSDGRLHLS-HKSVNAASPLYARWGMEFMEEMQHYVEQLDKSGGTPE 628

  Fly   635 ------EALN-------YVKTFMGNYTMDVAFIRGL----------QLYD--TNMSSVLGTGAQK 674
                  :.||       |::.....:..|:|..:.|          :..|  .|...|:|..|..
 Worm   629 HTQQFVQILNRPYYGKPYLRGSAAQFGRDIAATKALVGRAAKTIPFRACDKILNADQVVGKIAVV 693

  Fly   675 E-----YESRMRTLWQL---------YELQQQYVANIRVIQ-----------GL-GLLTFPADGD 713
            |     ::.:.|.:.|.         :|...|||.:.....           |: .:..|.|:||
 Worm   694 ERSDCVFQDKARFVQQAGAIGMVVIDHESNSQYVGDRPTFSMAVDKDGKDDIGIPSIFLFRAEGD 758

  Fly   714 R--------------IPSHLTEVLDSLDKSAHLEHM---------DLQDLETRVSNTSSPQLAHI 755
            .              |.||...:.:::.:......|         .|:|.:..:.|...|     
 Worm   759 HLLRSLKMHSETVISISSHHLSIENTIGRLLRYGKMFKFPEYPQCSLRDGDIILHNLDYP----- 818

  Fly   756 REVILKARNAYAIAMVNTSAMQEFAIRIYLSG-TSEAGVRIHPLLEDGELSEEARKRPLKLAEER 819
             ||||..|                     .:| ..::..|:|..:.:..::|..:....|.|:  
 Worm   819 -EVILNLR---------------------FNGINQDSDPRLHQEIVERHVTELQKYLEFKDAD-- 859

  Fly   820 ALFSYARRIVDF--------------RKRMAETVDRLQTL-MQDIPP 851
                ||.:..:|              ..::...:..|.|| .:.|||
 Worm   860 ----YAFQFYEFFRTAAYGALDLNVENSKLLTVISALSTLKTKPIPP 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:279825 171/459 (37%)
ZC506.1NP_509671.3 Glyco_hydro_47 36..473 CDD:279825 171/461 (37%)
PA_EDEM3_like 648..772 CDD:239041 20/123 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.