DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem1 and Edem2

DIOPT Version :9

Sequence 1:NP_001259152.1 Gene:Edem1 / 31154 FlyBaseID:FBgn0023511 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_663512.2 Gene:Edem2 / 108687 MGIID:1915540 Length:577 Species:Mus musculus


Alignment Length:552 Identity:306/552 - (55%)
Similarity:387/552 - (70%) Gaps:10/552 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PGTLICAVLLVLLSTGVSGQKQYSKARKLELREDVRRMFQHAYDGYLRHASNYDELRPLTCDGHD 75
            |..|:|  :|:.|..|..| ...:.......||.|:.||.||||.||.:|..|||||||||||||
Mouse     8 PLGLVC--VLLPLHHGAPG-PDGTAPDPAHYRERVKAMFYHAYDSYLENAFPYDELRPLTCDGHD 69

  Fly    76 TWGSYSLTLIDALDTLATMGNFTEFRRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLSK 140
            ||||:|||||||||||..:||.:||:|...:|::.:|||.|:|.||||||||:||||||||||||
Mouse    70 TWGSFSLTLIDALDTLLILGNTSEFQRVVEVLQDNVDFDIDVNASVFETNIRVVGGLLSAHLLSK 134

  Fly   141 RAGVELEPGWPCKGPLLRLAEDVARRLLPAFVTNTGMPYGTVNLRYGVPKGETSITCTAGVGTFL 205
            :||||:|.||||.|||||:||:.||:|||||.|.||||||||||.:||..|||.:|||||:|||:
Mouse   135 KAGVEVEAGWPCSGPLLRMAEEAARKLLPAFQTPTGMPYGTVNLLHGVNPGETPVTCTAGIGTFI 199

  Fly   206 IEFGTLSRLTGKTIYEDVAMKAVHALWAYRSPIGLFGNHIDVQSGRWTALDSGIGAGVDSLFEYL 270
            :||.|||.|||..::||||..|:..||..||.|||.||||||.:|:|.|.|:||||||||.||||
Mouse   200 VEFATLSSLTGDPVFEDVARVALMRLWESRSDIGLVGNHIDVLTGKWVAQDAGIGAGVDSYFEYL 264

  Fly   271 VKASVLLNRPELLELFHEARAAIDKYMRKEDWYVWVGMNKGRVTLPVFQSLEAFWPGILSIIGDT 335
            ||.::||...:|:.:|.|...||..|...:|||:||.|.||.|::||||||||:|||:.|:|||.
Mouse   265 VKGAILLQDKKLMAMFLEYNKAIRNYTHFDDWYLWVQMYKGTVSMPVFQSLEAYWPGLQSLIGDI 329

  Fly   336 EPALRTISRYIGVWKKYGFLPEFYNIAAGEASPNREVYPLRPELIESAMYLYRATGNEYLLEFGE 400
            :.|:||...|..|||::|.|||||||..|.....||.|||||||||||||||||||:..|||.|.
Mouse   330 DNAMRTFLNYYTVWKQFGGLPEFYNIPQGYTVEKREGYPLRPELIESAMYLYRATGDPTLLELGR 394

  Fly   401 HMLETLEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKYLYLLFDEENFLHNDGSGGELLST 465
            ..:|::|..:|.:||:|||:::..|:.:|||||||||||.|||||||...||:||:||..:.:.|
Mouse   395 DAVESIEKISKVECGFATIKDLRDHKLDNRMESFFLAETVKYLYLLFHPNNFIHNNGSTFDSVMT 459

  Fly   466 EDDVCVVQAGAYIFNTEAHPMDMSALHCCHAHNEDIYTSLDL--QRFSPRAILERSKKRQVAVQE 528
            ....|::.||.|||||||||:|.:|||||....|:.:...||  :.:|.:....:..:|:.....
Mouse   460 PHGECILGAGGYIFNTEAHPIDPAALHCCRRLKEEQWEVEDLIKEFYSLKQSRPKRAQRKTVRSG 524

  Fly   529 QWVPQCHPENNEFFNKEDESVQAQDSEKEQER 560
            .|.||..|.     .....:.|.::.:..|:|
Mouse   525 PWEPQSGPA-----TLSSPANQPREKQPAQQR 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem1NP_001259152.1 Glyco_hydro_47 48..486 CDD:279825 277/437 (63%)
Edem2NP_663512.2 Glyco_hydro_47 42..480 CDD:307602 277/437 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 513..561 8/44 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 580 1.000 Domainoid score I214
eggNOG 1 0.900 - - E1_KOG2429
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H10075
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 1 1.000 - - oto91918
orthoMCL 1 0.900 - - OOG6_101442
Panther 1 1.100 - - LDO PTHR45679
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3607
SonicParanoid 1 1.000 - - X4562
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.810

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