DRSC/TRiP Functional Genomics Resources

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Protein Alignment mip130 and Lin9

DIOPT Version :9

Sequence 1:NP_569958.2 Gene:mip130 / 31153 FlyBaseID:FBgn0023509 Length:986 Species:Drosophila melanogaster
Sequence 2:XP_001067807.3 Gene:Lin9 / 689523 RGDID:1591104 Length:558 Species:Rattus norvegicus


Alignment Length:708 Identity:216/708 - (30%)
Similarity:308/708 - (43%) Gaps:203/708 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 DEEPDSNENSAPEEQVEPPAFSLATLGLQRVGSAPPPKPKVQKAPI-------PTLNARGMPARI 140
            |:.||  |:|:.:..|.....||:....::..|       :||.|:       |.:.   ||.|.
  Rat    21 DQLPD--ESSSAKALVSLKEGSLSNTWNEKYSS-------LQKTPVWKGRNAGPAVE---MPFRN 73

  Fly   141 RKRNRLFYDENIINDDKPLRMSLAPKKTPGRPPQSAGGGSSQKIPLTPSKVLKKRKGVVSRYMRS 205
            .||:|||.||    ||:.:.     .|:|.|         :|::.:.|.|.              
  Rat    74 SKRSRLFSDE----DDRQIN-----TKSPKR---------NQRVAMIPQKF-------------- 106

  Fly   206 SEQGTNSVSASNQPQLLGKHKKATPSKSQSVGSKLGSGGPKTGRGAHFIGKGTAAAVAAVAAAEE 270
                |.::|              ||.|..|                                   
  Rat   107 ----TATMS--------------TPDKKAS----------------------------------- 118

  Fly   271 EANQAEAAALANKRLGQSIGLRLRNLLKLPKAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAP 335
                            |.||.||||||||||||||.|.|||||.:||||||..::|...:.|..|
  Rat   119 ----------------QKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFP 167

  Fly   336 RLGTRSLIRHEWVNIRRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSMLSDM 400
            .|.||.|.|.||..|||.||:|||||:.||.|||..|.:|||.||.||.||..:    ||...|:
  Rat   168 NLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVAD----VSQFKDL 228

  Fly   401 PEKIPMTLPLGTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLGTHAIPDYEIVSENFH 465
            |::||:.|.:|||||||||...||:|.|.:.|.|:|||.|||||:|.|||||.|||||::|...|
  Rat   229 PDEIPLPLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPH 293

  Fly   466 EMLPLHSFTKDFRPNLMSIYQTNNLGFTTNLGFTANLTNNYLQKKEKIDGGAGAAAGAGSLYFKP 530
            |.:|:.:|.:..||:..         |.|                                  .|
  Rat   294 ETMPIAAFGQKQRPSRF---------FMT----------------------------------PP 315

  Fly   531 QKHLATNNAAARNALSMKLNKSDPLLGQDSVGVSPIRQQLTRN-----RGYSTSLLEHLVRLEKY 590
            :.|...       .|...:...||||||     ||.|.:::.:     .|:....|..:.:|.|.
  Rat   316 RLHYTP-------PLQSPITDGDPLLGQ-----SPWRSKISGSDTETLGGFPVEFLIQVTKLSKI 368

  Fly   591 IAVKADRIQRLNKMNGTAELAMGDMISHDENGDRHRRQIAVNFQRQYAFNIVTIERINAELMFEL 655
            :.:|.:.|::|.:||..||....           :...|.:.|||:||..::.:|::|.:|...|
  Rat   369 LMIKKEHIKKLREMNTEAEKLKS-----------YSMPIGIEFQRRYATIVLELEQLNKDLNKVL 422

  Fly   656 TKVQELSSSLTRNPNVQAMISPTYLREECRAKASQTVDDINKG----MVKNTRMIKLLKDLTTLL 716
            .|||:....|..:..:|....||.:|..|..:|.:.|...|..    .|:|..:..|:..||.:|
  Rat   423 HKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRQANSASGQPCVENENLTDLISRLTAIL 487

  Fly   717 IVTQNL--GGDCEVSEVNEVLEGCLEEVRSNLICSENREVFQMSVQGRLEYIAMDISR 772
            :..:.|  |||....|...:.:. |.::: |.|.:.|...||.:|:..:.:|...:|:
  Rat   488 LQIKCLAEGGDLNSFEFKSLTDS-LNDIK-NTIDASNISCFQNNVEIHVAHIQSGLSQ 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip130NP_569958.2 DIRP 311..419 CDD:284095 58/107 (54%)
Lin9XP_001067807.3 DIRP 143..247 CDD:399528 58/107 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334844
Domainoid 1 1.000 151 1.000 Domainoid score I4260
eggNOG 1 0.900 - - E1_KOG1019
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H35252
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279992at33208
OrthoFinder 1 1.000 - - FOG0005813
OrthoInspector 1 1.000 - - oto98582
orthoMCL 1 0.900 - - OOG6_106727
Panther 1 1.100 - - LDO PTHR21689
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4787
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.750

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