DRSC/TRiP Functional Genomics Resources

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Protein Alignment mip130 and lin-9

DIOPT Version :9

Sequence 1:NP_569958.2 Gene:mip130 / 31153 FlyBaseID:FBgn0023509 Length:986 Species:Drosophila melanogaster
Sequence 2:NP_001023016.1 Gene:lin-9 / 176256 WormBaseID:WBGene00002998 Length:644 Species:Caenorhabditis elegans


Alignment Length:685 Identity:158/685 - (23%)
Similarity:299/685 - (43%) Gaps:128/685 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 PKVQKAPIPTLNARGMPARIRKRNRLFYDENIINDDKPLRMSLAPKKTPGRPPQSAGGGSSQKI- 184
            |....:|........:|:|.|.      :|..::..:.::.:.:|||:|.:  :..||..|..: 
 Worm    19 PDRTSSPYSLRETSKVPSRYRN------EELYLSPSRSIKRTGSPKKSPAK--RLNGGRDSPSVN 75

  Fly   185 PLTPSKVLKKRKGVVSRYMRSSEQGTNSVSASNQPQLLGKHKKATPSKSQSVGSKLGSGGPKTGR 249
            .||.:..|.    ::::.....|..:.::....||    |.::..|.::.::       .|....
 Worm    76 SLTRNSSLT----MLAKAALDYESSSCALEYIFQP----KEERRPPRRALAL-------SPPPAP 125

  Fly   250 GAHFIGKGTAA------AVAAVAAAEEEANQA--------------------EAAALANK----- 283
            ....:.|....      .||.:...:..||..                    |.:|:..:     
 Worm   126 SNDLLAKDLEMIEMHQNLVAGLDDLDNPANMTNEAVEHRDTQSFFNMFSTDQERSAMMKQFKTYK 190

  Fly   284 -RLGQSIGL-------RLRNLLKLPKAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAPRLGTR 340
             :..:.:..       :|.|||:..||.:|.:.|:|||.:|:.:|:..:||...:.|..|.|...
 Worm   191 NQTSEDVSTFMRANIKKLYNLLRYKKARQWVMCEFFYSAIDEQIFKEENEFATIIRESFPNLKNW 255

  Fly   341 SLIRHEWVNIRRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSM-LSDMPEKI 404
            :|.|.||.:||:.:|:|||||..||.|||..|:.||..||::..   |.:.:..|: |.|:|.|:
 Worm   256 NLTRIEWRSIRKLLGKPRRCSKVFFEEERMYLEEKRMKIRSVYE---GSYLNDPSIDLKDLPAKL 317

  Fly   405 PMTLPLGTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLGTHAIPDYEIVSENFHEMLP 469
            |..:.:|.:|.||:|:|.|||::|.:.|.  :...:|:.|::..:....:.|.||:.:...::|.
 Worm   318 PRPMVVGNRVFARIRNPYDGIYSGIIDAV--IPKGFRIIFDKPDIPPTLVSDTEILLDGKLDLLS 380

  Fly   470 LHSFTKDFRPNLMSIYQTNNLGFTTNLGFTANLTNNYLQKKEKIDGGAGAAAGAGSLYFKPQKHL 534
            :..|          |.|.|:                      |:..|......|  :......||
 Worm   381 IAYF----------IEQANS----------------------KLPSGVRPFVAA--VRDSSHPHL 411

  Fly   535 ATNNAAARNAL-SMKLNKS-DPLLGQDSVGVSPIRQQLTRNRGYSTSLLEHLVRLEKYIAVKADR 597
                  .|:.| |.|:.:| .||:|.:...::....::..|  :....|.:||:|.|.|.:|...
 Worm   412 ------VRDVLVSRKIERSGGPLMGPNDERLNGKNAEMVGN--FPLKFLVNLVKLTKLIDIKKGL 468

  Fly   598 IQRLNKMNGTAELAMGDMISHDENGDRHRRQIAVNFQRQYAFNIVTIERINAELMFELTKVQELS 662
            |::||::|..||:       .:...|::.:.    ||.:||..|:.:|.:|..:...:..:|:..
 Worm   469 IRQLNELNADAEI-------QNMTSDKYSKA----FQEKYAKTIIDLEHVNQNIDINMNGIQDHH 522

  Fly   663 SSLTRNPNVQAMISPTYLREECRAKASQTVDDINKGM-VKNTRMIKLLKDLTTLLIVTQNLGGDC 726
            ...:.|....:.:.|..:|:.|..:|.:.|:..|:|: |:|...:.|::.||.:|:..:.:|.. 
 Worm   523 MYFSSNDISTSNMKPEAVRQMCSQQAGRFVEHCNQGLNVENVHALTLIQSLTAVLLQVRTMGTQ- 586

  Fly   727 EVSEVN-EVLEGCLEEVRSNLICSENREVFQMSVQ 760
            ::|.|: :.|...:.|:|: .|...|...||..|:
 Worm   587 KISAVDLQSLGDAISEIRT-AIHPRNVAFFQDYVE 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip130NP_569958.2 DIRP 311..419 CDD:284095 43/108 (40%)
lin-9NP_001023016.1 DIRP 226..332 CDD:284095 43/108 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156314
Domainoid 1 1.000 83 1.000 Domainoid score I5373
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H35252
Inparanoid 1 1.050 84 1.000 Inparanoid score I3747
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279992at33208
OrthoFinder 1 1.000 - - FOG0005813
OrthoInspector 1 1.000 - - oto19692
orthoMCL 1 0.900 - - OOG6_106727
Panther 1 1.100 - - LDO PTHR21689
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2615
SonicParanoid 1 1.000 - - X4787
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.930

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