DRSC/TRiP Functional Genomics Resources

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Protein Alignment mip130 and lin9

DIOPT Version :9

Sequence 1:NP_569958.2 Gene:mip130 / 31153 FlyBaseID:FBgn0023509 Length:986 Species:Drosophila melanogaster
Sequence 2:XP_002941177.2 Gene:lin9 / 100491065 XenbaseID:XB-GENE-963299 Length:561 Species:Xenopus tropicalis


Alignment Length:634 Identity:198/634 - (31%)
Similarity:297/634 - (46%) Gaps:127/634 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 RPPQSAGGGSSQKIPL---------TPSKVLKKRKGVVS-----RYMRSSEQGTNS-----VSAS 216
            |.|...|..:.:..||         :...::..::|.:|     :|  ||.|.|.:     :||:
 Frog     8 RSPAGPGNEAEEARPLELLAEEEDSSAKALVSLKEGGLSNTWNEKY--SSPQKTPNWKGGIISAN 70

  Fly   217 NQPQLLGKHKKATPSKSQ-SVGSKLGSGGPKTGRGAHFIGKGTAAAVAAVAAAEEEANQAEAAAL 280
            ..|..|.|..:....:.: .:.::.....|||                  ....::.|......:
 Frog    71 ETPYKLSKRSRLLSDEDERQLTTRSPKRNPKT------------------TVVPQKFNVTSTTPV 117

  Fly   281 ANKRLGQSIGLRLRNLLKLPKAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAPRLGTRSLIRH 345
              |:..|.||.||||||||||||||.|.|||||.:||||||..::|...:.|..|.|.||.|.|.
 Frog   118 --KKASQKIGYRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRV 180

  Fly   346 EWVNIRRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSMLSDMPEKIPMTLPL 410
            ||..|||.||:||||||.||.|||..|::|||.||.||.||..:    ||...|:|::||::|.:
 Frog   181 EWGKIRRLMGKPRRCSAAFFEEERSALEQKRQKIRLLQQRKVAD----VSQFKDLPDEIPLSLVI 241

  Fly   411 GTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLGTHAIPDYEIVSENFHEMLPLHSFTK 475
            |||||||||...||:|.|.:.|.|:.|:.|||||:|.|||||.|||||::|...||.:|:.:|.:
 Frog   242 GTKVTARLRGVHDGLFTGQIDAVDTQNSTYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQ 306

  Fly   476 DFRPNLMSIYQTNNLGFTTNLGFTANLTNNYLQKKEKIDGGAGAAAGAGSLYFKPQKHLATNNAA 540
            ..||..|                                            :..|.:       :
 Frog   307 KQRPPRM--------------------------------------------FMTPPR-------S 320

  Fly   541 ARNALSMKLNKSDPLLGQDSVGVSPIRQQLTRN-----RGYSTSLLEHLVRLEKYIAVKADRIQR 600
            :..|:...:.:||.||||     ||.:.:::.:     .|:....|..:.||.|.:.:|.:.|:.
 Frog   321 SYTAIQSPVMESDTLLGQ-----SPWKAKISSSDTETIGGFPVEFLVQVTRLSKILMIKKEHIKL 380

  Fly   601 LNKMNGTAELAMGDMISHDENGDRHRRQIAVNFQRQYAFNIVTIERINAELMFELTKVQELSSSL 665
            |..||..||....           :...|::.|||:||..::.:|::|.:|...|.|||:....|
 Frog   381 LRDMNTEAEKLKS-----------YSSPISIEFQRRYATIVLDLEQLNKDLNKVLHKVQQYCYEL 434

  Fly   666 TRNPNVQAMISPTYLREECRAKASQTVDDIN-----KGMVKNTRMIKLLKDLTTLLIVTQNL--G 723
            ..:..:|....||.:|..|...|.|.|...|     :..|:|..:.:|:..||.:|:..:.|  |
 Frog   435 APDQGLQPADQPTSMRRRCEEDARQMVRRANTSSTGQPCVQNESLTELISRLTAILLQIKCLAEG 499

  Fly   724 GDCEVSEVNEVLEGCLEEVRSNLICSENREVFQMSVQGRLEYIAMDISR 772
            ||....|...:.:. :.:::|. |...|...||.:|:..:.:|...:|:
 Frog   500 GDLNSFEFKSLTDS-INDIKST-ISPSNISCFQNNVEIHVAHIQSGLSQ 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mip130NP_569958.2 DIRP 311..419 CDD:284095 59/107 (55%)
lin9XP_002941177.2 DIRP 146..250 CDD:368989 59/107 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5916
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H35252
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279992at33208
OrthoFinder 1 1.000 - - FOG0005813
OrthoInspector 1 1.000 - - oto105274
Panther 1 1.100 - - LDO PTHR21689
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4787
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.020

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