DRSC/TRiP Functional Genomics Resources

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Protein Alignment arm and VAC8

DIOPT Version :10

Sequence 1:NP_476665.2 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_010903.3 Gene:VAC8 / 856702 SGDID:S000000739 Length:578 Species:Saccharomyces cerevisiae


Alignment Length:533 Identity:121/533 - (22%)
Similarity:209/533 - (39%) Gaps:125/533 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 SPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTL-------LQRNNVKFLAIVTDCLQI 311
            ||:......|:|.|...|  :|..::.....|.|:.:.||       |||:.....|.:|:    
Yeast    18 SPIADNEREAVTLLLGYL--EDKDQLDFYSGGPLKALTTLVYSDNLNLQRSAALAFAEITE---- 76

  Fly   312 LAYGNQESK------LIILASGGPNELVRIMRSYDYEKLLWTTSRVLKVLSVCSSNKPAIVDAGG 370
             .|..|.|:      ||:|.|..|...|             .....|..|:|.:.||..||:.||
Yeast    77 -KYVRQVSREVLEPILILLQSQDPQIQV-------------AACAALGNLAVNNENKLLIVEMGG 127

  Fly   371 MQALAMHLGNMSPRLVQN---CLWTLRNLSDAATKVEGLEALLQSLVQVLGSTDVNVVTCAAGIL 432
            ::.|...:...:..:..|   |:..|....|...|:....||: .|.::..|..:.|...|.|.|
Yeast   128 LEPLINQMMGDNVEVQCNAVGCITNLATRDDNKHKIATSGALI-PLTKLAKSKHIRVQRNATGAL 191

  Fly   433 SNLTCNNQRNKATVCQVGGVDALVRTI-------------------INAGDREEI--TEP----- 471
            .|:| :::.|:..:...|.|..||..:                   ::..:|:::  |||     
Yeast   192 LNMT-HSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSK 255

  Fly   472 ---------------AVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHPPSRWPLIKAVIGL 521
                           |..|||:|.|   |:......||.. ||..:|||:...| .||:.|.:..
Yeast   256 LVSLMDSPSSRVKCQATLALRNLAS---DTSYQLEIVRAG-GLPHLVKLIQSDS-IPLVLASVAC 315

  Fly   522 IRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTER--------QRSSIATTGSQQPSAYADGV- 577
            |||:::.|.|...:.:.|.:..|||||  .::|:|.        .|:..|::...:...:..|. 
Yeast   316 IRNISIHPLNEGLIVDAGFLKPLVRLL--DYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAV 378

  Fly   578 -RMEEI-------VEGTVGA-LHILARESHNRALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCE 633
             :.:|:       |:..:.| ..|||....::..:.:.:::...:.:.|::.:.:...||..|..
Yeast   379 EKCKELALDSPVSVQSEISACFAILALADVSKLDLLEANILDALIPMTFSQNQEVSGNAAAALAN 443

  Fly   634 LAADKEG-AEIIE-----QEGATGPLTDLL---HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSI 689
            |.:.... .:|||     .||..|.|...|   ::..|.:|.:....|.....||.:|       
Yeast   444 LCSRVNNYTKIIEAWDRPNEGIRGFLIRFLKSDYATFEHIALWTILQLLESHNDKVED------- 501

  Fly   690 ELTNSLLREDNNI 702
                 |::.|::|
Yeast   502 -----LVKNDDDI 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_476665.2 CTNNAbd_dArm 85..159 CDD:439243
Adaptin_N <150..>314 CDD:396262 16/66 (24%)
armadillo repeat 161..186 CDD:293788
armadillo repeat 193..231 CDD:293788
armadillo repeat 238..270 CDD:293788 5/15 (33%)
armadillo repeat 278..314 CDD:293788 9/42 (21%)
armadillo repeat 320..355 CDD:293788 7/40 (18%)
Arm 361..398 CDD:425727 10/39 (26%)
armadillo repeat 362..397 CDD:293788 9/37 (24%)
armadillo repeat 410..435 CDD:293788 6/24 (25%)
Arm 439..481 CDD:425727 14/82 (17%)
armadillo repeat 443..481 CDD:293788 13/78 (17%)
armadillo repeat 490..525 CDD:293788 13/34 (38%)
Arm 597..636 CDD:425727 5/38 (13%)
armadillo repeat 600..636 CDD:293788 5/35 (14%)
armadillo repeat 641..675 CDD:293788 11/41 (27%)
VAC8NP_010903.3 SRP1 42..>358 CDD:227396 83/342 (24%)
armadillo repeat 119..155 CDD:293788 9/35 (26%)
armadillo repeat 160..194 CDD:293788 9/34 (26%)
armadillo repeat 204..235 CDD:293788 4/30 (13%)
armadillo repeat 242..280 CDD:293788 9/37 (24%)
armadillo repeat 286..319 CDD:293788 13/34 (38%)
armadillo repeat 326..361 CDD:293788 9/36 (25%)
armadillo repeat 369..402 CDD:293788 4/32 (13%)
Blue background indicates that the domain is not in the aligned region.

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