DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment arm and AT5G18330

DIOPT Version :9

Sequence 1:	NP_001259149.1	Gene:	arm / 31151	FlyBaseID:	FBgn0000117	Length:	843	Species:	Drosophila melanogaster
Sequence 2:	NP_197334.1	Gene:	AT5G18330 / 831951	AraportID:	AT5G18330	Length:	445	Species:	Arabidopsis thaliana

Alignment Length:	283	Identity:	60/283 - (21%)
Similarity:	115/283 - (40%)	Gaps:	53/283 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly   108 PETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDA--ELATRA---------- 160
            |:|.:|.|::    |.....:.:||:|.||.         :..|.:|  |||.:|
plant   139 PKTSDEVIDL----FTGDLESLLQRISSPSS---------VEDQTEAAKELALKAKRFSSVCVYF 190

  Fly   161 ---IPELIKLL-------NDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSND 215
               ||:.|..|       .|.:...:......:|..|..|.::..:..:|.::..|.:.:.....
plant   191 VAKIPDSITRLLTPLSISEDSNPEFLENIVTALHIFSTSEKNKTLVAENPLVLPLLAKYMKQGTV 255

  Fly   216 LESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMA 280
            |....:| .|:::||:.....:.|..|..:.||:.::..........|.:.|.||...::.|:.|
plant   256 LTRIHSA-ATVNSLSYTDSNKIIIGNSEVLKALIHVIEEGDSLATSEAFSALSNLCPVKEISEKA 319

  Fly   281 VR---LAGGLQKMVTLLQRNNVKFLAIVTDCLQILAY---GNQESKLIILASGGPNELVRIMRSY 339
            |.   :...::|   :...:||..|      |.:||:   .|.::...:...|...:|..|:|:.
plant   320 VSEGLIRAAIKK---IKAGSNVSML------LSLLAFVSTQNHQTTEEMDNLGLIYDLFSILRNS 375

  Fly   340 DYEKLLWTTSRVLKVLSVCSSNK 362
            :  .|:...:.|:.|.::|.|.|
plant   376 N--SLVNDENAVVIVYNICKSYK 396

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
arm	NP_001259149.1	Adaptin_N	<150..>314	CDD:331138	38/188 (20%)
		armadillo repeat	161..186	CDD:293788	6/31 (19%)
		armadillo repeat	193..231	CDD:293788	6/37 (16%)
		armadillo repeat	238..270	CDD:293788	6/31 (19%)
		armadillo repeat	278..314	CDD:293788	8/38 (21%)
		armadillo repeat	320..355	CDD:293788	6/34 (18%)
		Arm	361..398	CDD:278915	1/2 (50%)
		armadillo repeat	362..397	CDD:293788	1/1 (100%)
		armadillo repeat	410..435	CDD:293788
		Arm	439..481	CDD:278915
		armadillo repeat	443..481	CDD:293788
		armadillo repeat	490..525	CDD:293788
		Arm	597..636	CDD:278915
		armadillo repeat	600..636	CDD:293788
		armadillo repeat	641..675	CDD:293788
AT5G18330	NP_197334.1	Ubox	68..130	CDD:128780
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910