DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arm and SAUR21

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_195803.1 Gene:SAUR21 / 831850 AraportID:AT5G01830 Length:674 Species:Arabidopsis thaliana


Alignment Length:712 Identity:144/712 - (20%)
Similarity:246/712 - (34%) Gaps:244/712 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQ 121
            |:..|...|:  ||.|.|               ....||..|..::.|::|.|.|     :|.:|
plant    39 LASHEISSMQ--PLPFIL---------------RRNSLSLIRKVKILASVFDELL-----LPRSQ 81

  Fly   122 -----------FDPQQPTAVQRL-------SEPSQMLKHAVVNLINY------------------ 150
                       |:..| ..:||:       |..|::.....::::.:                  
plant    82 LVVYSQSAHLCFEEMQ-IVMQRIKSLIDDCSRVSKLWLLLQIDIVAFNFHELVTDLSTVLDILPL 145

  Fly   151 -----QDDAE----LATRAIPELIKLLNDED----QVVVSQAAMMVHQLSKKEASRHAIMNSPQM 202
                 .|||:    |.|:...:.::.::..|    :.|....|.:.||:|...::...|.|...:
plant   146 HDFDLSDDAQDLISLLTKQCSDSVQFVDARDVALRRKVTDTIAGIKHQISPDHSTLIKIFNDLGL 210

  Fly   203 --VAALVRAISNSNDL------ESTKAAVGTLHNLSHHRQGLL-------------AIFKSGGIP 246
              .|:|...|....|.      :.:|:|..:|..|..:.:.:|             .......||
plant   211 SDSASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVRYSKCVLYGPSTPAPDFRRHQSLSDANIP 275

  Fly   247 A------LVKLLSSPV----------ESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQ 295
            |      .::|:..||          ||:..: |.:.||          .....|.:.|..:|:.
plant   276 ADFRCPITLELMRDPVVVATGQTYDRESIDLW-IQSGHN----------TCPKTGQVLKHTSLVP 329

  Fly   296 RNNVKFLAIVTDCLQILAYGNQESKLIILASGGPN--------ELVRIMRSYDYEKLLWTTSR-- 350
            ...:|.| ||..|      .:|:....:...||..        |..::|.|:..|||....|.  
plant   330 NRALKNL-IVLWC------RDQKIPFELYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSNGV 387

  Fly   351 VLKVLSVCSSN---KPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLS---DAATKVEGLEAL 409
            |.::.::..|:   :..|.:||.:..|..:|....|.|..|.:.|:.|||   ...|::...:..
plant   388 VFELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMETDGA 452

  Fly   410 LQSLVQVL--GSTDVNVVTCAAGI--LSNLTCNNQR--NKATVCQVGGV-------------DAL 455
            |..:::||  |:|.......||.:  |:.::...:|  .||.|  |.|:             |||
plant   453 LNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARV--VSGLVDLAKQGPTSSKRDAL 515

  Fly   456 VRTIINAGDREEITEPAVCALRHLTSRHVDS-----------ELAQNAVRLNYGLSVIVKLLHPP 509
            |..:....:||.:            .|.|::           ||.:.||                
plant   516 VAILNLVAERENV------------GRFVEAGVMGAAGDAFQELPEEAV---------------- 552

  Fly   510 SRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLL---MRAFQDTERQRSSIATT------ 565
               .:::||:           ....|....|...|:|||   ||...||.|: |:.||.      
plant   553 ---AVVEAVV-----------RRGGLMAVSAAFSLIRLLGEVMREGADTTRE-SAAATLVTMCRK 602

  Fly   566 -GSQQPSAYADGVRMEEIVEGTVGA------------LHILAR----ESHNRALIRQQSVIP 610
             ||:..:..|....:|.::...:||            :..|.|    ::||.|...|..|:|
plant   603 GGSELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLMRYLRRWAAGDTHNTAAETQSIVVP 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 41/231 (18%)
armadillo repeat 161..186 CDD:293788 4/28 (14%)
armadillo repeat 193..231 CDD:293788 10/45 (22%)
armadillo repeat 238..270 CDD:293788 10/47 (21%)
armadillo repeat 278..314 CDD:293788 8/35 (23%)
armadillo repeat 320..355 CDD:293788 10/44 (23%)
Arm 361..398 CDD:278915 12/42 (29%)
armadillo repeat 362..397 CDD:293788 10/34 (29%)
armadillo repeat 410..435 CDD:293788 8/28 (29%)
Arm 439..481 CDD:278915 12/56 (21%)
armadillo repeat 443..481 CDD:293788 11/50 (22%)
armadillo repeat 490..525 CDD:293788 4/34 (12%)
Arm 597..636 CDD:278915 6/14 (43%)
armadillo repeat 600..636 CDD:293788 4/11 (36%)
armadillo repeat 641..675 CDD:293788
SAUR21NP_195803.1 MLKL_NTD 55..>145 CDD:414374 15/95 (16%)
Ubox 277..340 CDD:128780 15/74 (20%)
PLN03200 <391..>524 CDD:215629 32/134 (24%)
armadillo repeat 402..438 CDD:293788 11/35 (31%)
armadillo repeat 444..479 CDD:293788 8/34 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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