DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arm and odad2

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:XP_005156286.1 Gene:odad2 / 799229 ZFINID:ZDB-GENE-100316-7 Length:1047 Species:Danio rerio


Alignment Length:802 Identity:161/802 - (20%)
Similarity:276/802 - (34%) Gaps:292/802 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLG-DSGIHSGAV---------------TQ 53
            |.||:..:...:..|            :|.|:.   || .|....|.|               |:
Zfish   345 PVQNKLGNRKKKLEP------------SLKWKN---LGLTSPYDEGEVKARKIRESKKIFEYGTK 394

  Fly    54 VPSLSGKEDEEMEGDPL-----MFDLDT-GFPQNFTQDQVDDMNQQLSQTRSQRVRAAMFPETLE 112
            .|:...|:...:.|..|     ...:.| |..::|::...::     .:...|..|.|      |
Zfish   395 SPTSESKKKTNISGSSLPGLQSSQKIKTPGGAEDFSESSSEE-----EEDEEQHERRA------E 448

  Fly   113 EGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVV------NLINYQDDAELATRAIPELIKLLN-- 169
            ...::||..:..|:  .|:.|...:|.....|:      ||:  ||..:||.|.:..|..|:|  
Zfish   449 TATDLPSEYWQIQK--LVKYLKGANQTATVIVLCSLRDFNLV--QDTCQLAIRDVGGLEVLINLL 509

  Fly   170 DEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQ 234
            |.|::.....::.:                       ::.||.::.:..|.|      ||     
Zfish   510 DTDEIRCKIGSLKI-----------------------LKEISCNSQIRRTIA------NL----- 540

  Fly   235 GLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNNV 299
                    ||:..:|.:|.||.:.:...|..|:.|:...:...:| ||..||:|::|.||     
Zfish   541 --------GGLQTMVSILDSPDKELKCLAAETIANVAKFRRARRM-VRQHGGIQRLVELL----- 591

  Fly   300 KFLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYE------KLLWTTSRVLKVLSVC 358
                   ||:.                  ..|.:.:.:..|.|      ..||:.|:       .
Zfish   592 -------DCVP------------------AGESLSLEQQRDVEVARCGALALWSCSK-------S 624

  Fly   359 SSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSD-----AATKVEGLEALLQSLVQVLG 418
            :.||.||..|||:..|...|.:....::...:.||:..:.     .|.:.||   :::.||:   
Zfish   625 TWNKEAIRRAGGIPMLGRLLKSPQKNMLIPVVGTLQECASEKSYRIAIQAEG---MIEDLVK--- 683

  Fly   419 STDVNVVTCAAGILSNLTCNNQRNKATVCQVGGVDALVRTIINAGDREEITEPAVCALRHLTSRH 483
                           ||:|:||.     .|:....|:.:                ||        
Zfish   684 ---------------NLSCDNQE-----LQMHCASAIFK----------------CA-------- 704

  Fly   484 VDSELAQNAVRLNYGLSVIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLL 548
             :.:..::.||...||..:|.||:......|:.|..|.|...::...|.|..:|:..:..|||||
Zfish   705 -EDKHTRDLVRQYDGLKPLVTLLNEAENKQLLAATTGAIWKCSISMENVAKFQEYKVVEILVRLL 768

  Fly   549 MRAFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQSVI-PIF 612
                              :.||         ||::...||||....:.|.|.|.||:.|.| |:.
Zfish   769 ------------------TNQP---------EEVLVNVVGALGECGQISENLATIRRSSGIQPLV 806

  Fly   613 ------------------------------------VRLLFNEIEN----IQRVAAGVLCELAAD 637
                                                ||||::.::|    :|..||..:|....:
Zfish   807 NLLTGTNQALLVNVTKAVGACATDPENMMIIDRLDGVRLLWSLLKNPNPEVQASAAWAICPCIEN 871

  Fly   638 -KEGAEIIEQ-EGATGPLTDLLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDN 700
             |:..|::.. .|....:.:||.|:|:.|.....|.:.::::|          :|          
Zfish   872 AKDAGEMVRSFVGGLELIVNLLKSQNKDVLASVCAAIAKIAKD----------VE---------- 916

  Fly   701 NIWANADLGMGPDLQDMLGPEE 722
            |:....|.|:.|.|..:...||
Zfish   917 NLAVITDHGVVPMLASLTNTEE 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 36/165 (22%)
armadillo repeat 161..186 CDD:293788 5/26 (19%)
armadillo repeat 193..231 CDD:293788 6/37 (16%)
armadillo repeat 238..270 CDD:293788 8/31 (26%)
armadillo repeat 278..314 CDD:293788 11/35 (31%)
armadillo repeat 320..355 CDD:293788 6/40 (15%)
Arm 361..398 CDD:278915 11/36 (31%)
armadillo repeat 362..397 CDD:293788 10/34 (29%)
armadillo repeat 410..435 CDD:293788 2/24 (8%)
Arm 439..481 CDD:278915 6/41 (15%)
armadillo repeat 443..481 CDD:293788 4/37 (11%)
armadillo repeat 490..525 CDD:293788 11/34 (32%)
Arm 597..636 CDD:278915 17/79 (22%)
armadillo repeat 600..636 CDD:293788 15/76 (20%)
armadillo repeat 641..675 CDD:293788 8/34 (24%)
odad2XP_005156286.1 armadillo repeat 460..487 CDD:293788 5/28 (18%)
armadillo repeat 495..527 CDD:293788 7/54 (13%)
armadillo repeat 543..568 CDD:293788 6/24 (25%)
armadillo repeat 576..623 CDD:293788 16/77 (21%)
armadillo repeat 628..659 CDD:293788 8/30 (27%)
Arm_3 <634..>865 CDD:330530 64/308 (21%)
armadillo repeat 669..701 CDD:293788 12/57 (21%)
armadillo repeat 713..744 CDD:293788 11/30 (37%)
armadillo repeat 761..785 CDD:293788 13/50 (26%)
armadillo repeat 793..829 CDD:293788 6/35 (17%)
armadillo repeat 834..866 CDD:293788 8/31 (26%)
HEAT_2 845..950 CDD:316194 25/114 (22%)
armadillo repeat 876..908 CDD:293788 8/31 (26%)
HEAT repeat 923..961 CDD:293787 6/16 (38%)
HEAT repeat 970..992 CDD:293787
HEAT repeat 1005..1034 CDD:293787
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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