DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arm and pkp4

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:XP_690071.3 Gene:pkp4 / 561566 ZFINID:ZDB-GENE-120411-14 Length:1136 Species:Danio rerio


Alignment Length:895 Identity:196/895 - (21%)
Similarity:296/895 - (33%) Gaps:287/895 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LPPMVSAKEQTLMWQQNSYLGDSGIHSGAVTQVPSL--------------SGKED-EEMEGDPLM 71
            |||..|.....|   .:||||..|..:|:.:..|:|              .||.| ...|.....
Zfish   262 LPPASSHAPDPL---HSSYLGRHGNGTGSESGSPTLLRAGMTAQPQQYGTLGKHDTRAYESTHSS 323

  Fly    72 F----------------DLDTGFPQNFTQDQVDDMNQQLSQ-TRSQRVRAAMFPETLEEGIEIPS 119
            |                |..||...:::|      |.||.| |||        |:.....|....
Zfish   324 FGSRAYDIFERMVLSRPDSLTGLQTSYSQ------NSQLGQDTRS--------PDCHVTPIYEDR 374

  Fly   120 TQFDP--QQPT---------------AVQRLSEPSQMLKHAVVNLINYQDDAELATRAIPELIKL 167
            |..:|  |.||               .:||.:.....|:        ||                
Zfish   375 TFQNPLYQSPTHGSQSAASRNNTGFGTLQRTTSQCSTLR--------YQ---------------- 415

  Fly   168 LNDEDQVVVSQAAMMVHQLSKKEAS-RHAIMNSPQMVAALVRAISNSNDLESTKAAVGTLHNLSH 231
                 :.:.|..:|..|..:.:... |.|..|..:..|||..|::.|..::|.            
Zfish   416 -----RGLFSMGSMATHSDTYRPGHYRQADSNYSRHSAALDNAVTRSPSIDSV------------ 463

  Fly   232 HRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQR 296
            |:......::...:|.::::|.....||...|...:.:|....:..|..|...||::.:|.||..
Zfish   464 HKDPREFAWRDPELPEVIRMLQHHFPSVQANAAAYIQHLCYGDNRIKAEVCRLGGIRHLVDLLDH 528

  Fly   297 NNVKFLAIVTDCLQILAYG--NQESKLIILASGGPNELVRIMRSYDYEKLLWTTSRVLKVLSVCS 359
            ..::........|:.|.||  ..::|:.:..|||...|||::|.....::....:.||..||.|.
Zfish   529 KTLEVQRNACGALRNLVYGKATDDNKVCVRNSGGIPALVRLLRKTPDSEVRELVTGVLWNLSSCD 593

  Fly   360 SNKPAIV-DAGGM--------------------QALAMHLGNMSPRLVQNCLWTLRNLSDAATKV 403
            |.|..|. ||.|.                    |.|.:|    |..:::|....|||||.|    
Zfish   594 SVKMTITRDALGPLTNTVIIPHSGWGAAPQREDQKLKLH----SSLVLRNTTGCLRNLSSA---- 650

  Fly   404 EGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVGGVDALVRTIINAGDRE-E 467
             |.||..|             :.|..|::.:|.                 .:::|.:|..|.: :
Zfish   651 -GEEARRQ-------------MRCCEGLIDSLL-----------------YIIKTCVNTSDYDSK 684

  Fly   468 ITEPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHPP--------SRWPLIKAV------ 518
            |.|..||.||:|:.|   .||.....|| .|...:..||.|.        |.|.|.|..      
Zfish   685 IVENCVCTLRNLSYR---LELEMPPSRL-MGTQDLDTLLGPDTSSKQADYSCWGLRKKKKKRSWQ 745

  Fly   519 ------IGLIRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTERQRSSIATTGSQQPSAYADGV 577
                  :|.|...:..|.....|.....:...:.||..                |..|:.     
Zfish   746 DQQWDGVGPIPGFSGSPKGAEMLWHPSVVKPYLTLLAE----------------SSNPAT----- 789

  Fly   578 RMEEIVEGTVGALHILAR-----ESHNRALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAAD 637
                 :||..|:|..|:.     .|:.||.:|::..:||.|.||..:.:.:....|..|..:|.|
Zfish   790 -----LEGAAGSLQNLSAGTWRFASYIRAAVRKEKGLPILVELLRMDNDRVVCSVATALRNMALD 849

  Fly   638 KEGAEIIEQEG---------ATGP--LTD--------LLH---SRNEGVATYAAAV-----LFRM 675
            ....|:|.:..         ..||  |:|        .||   |||...|...|..     |..:
Zfish   850 ARNKELIGKYAMRDLVTRLPGNGPSLLSDETVAAVCCALHEVTSRNMENARALAQTGGIDKLVTI 914

  Fly   676 SEDKPQDYKKRLSIELTNSLLREDNNIWANADLGM-----GPDLQDMLGPEEAYE-GLYGQGPPS 734
            |..:.:.|    |:::..:..:..|.:|...||..     |.:....:.|....| ..|...|  
Zfish   915 SRGRGERY----SMKVVKAAAQVLNTLWQYRDLRTFYKKDGWNQNHFITPVSTLERDRYRSQP-- 973

  Fly   735 VHSSHGGRAFHQQGYDTLPIDSMQGLEISSPV--GGGGAGGAPGNGGAVG 782
                            |||..::|    .|||  .||.|..:|...|..|
Zfish   974 ----------------TLPTSNVQ----MSPVIQSGGSATSSPAMLGIRG 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 30/164 (18%)
armadillo repeat 161..186 CDD:293788 3/24 (13%)
armadillo repeat 193..231 CDD:293788 9/37 (24%)
armadillo repeat 238..270 CDD:293788 5/31 (16%)
armadillo repeat 278..314 CDD:293788 9/35 (26%)
armadillo repeat 320..355 CDD:293788 10/34 (29%)
Arm 361..398 CDD:278915 14/57 (25%)
armadillo repeat 362..397 CDD:293788 13/55 (24%)
armadillo repeat 410..435 CDD:293788 3/24 (13%)
Arm 439..481 CDD:278915 10/42 (24%)
armadillo repeat 443..481 CDD:293788 10/38 (26%)
armadillo repeat 490..525 CDD:293788 12/54 (22%)
Arm 597..636 CDD:278915 11/38 (29%)
armadillo repeat 600..636 CDD:293788 10/35 (29%)
armadillo repeat 641..675 CDD:293788 14/60 (23%)
pkp4XP_690071.3 DUF966 <105..>252 CDD:283735
ARM 469..591 CDD:237987 28/121 (23%)
armadillo repeat 477..502 CDD:293788 5/24 (21%)
HEAT_2 506..580 CDD:290374 19/73 (26%)
armadillo repeat 510..546 CDD:293788 9/35 (26%)
armadillo repeat 554..589 CDD:293788 10/34 (29%)
armadillo repeat 595..647 CDD:293788 12/55 (22%)
ARM 636..>699 CDD:237987 24/97 (25%)
armadillo repeat 765..802 CDD:293788 10/62 (16%)
ARM 766..893 CDD:237987 31/152 (20%)
armadillo repeat 812..846 CDD:293788 10/33 (30%)
armadillo repeat 853..893 CDD:293788 8/39 (21%)
armadillo repeat 899..934 CDD:293788 6/38 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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