DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arm and jupa

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_571252.1 Gene:jupa / 30415 ZFINID:ZDB-GENE-991207-22 Length:729 Species:Danio rerio


Alignment Length:748 Identity:455/748 - (60%)
Similarity:558/748 - (74%) Gaps:43/748 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DLPPMVSAKEQTLMWQQNSYLGDSGIHSGAVTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQD 85
            :.|..|...|    |||:.|..||||||||.| |.|    :|:..|.....|...|.|.:|    
Zfish     7 EAPGSVKVTE----WQQSYYGTDSGIHSGATT-VRS----DDDGTEYSSKKFTYTTTFTEN---- 58

  Fly    86 QVDDMNQQLSQTRSQRVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINY 150
             ..::..||:.||:|||||||||||:.||..|.|||.||.|.|.||:|:||||.||.|:|:||||
Zfish    59 -PAEVESQLNMTRAQRVRAAMFPETVMEGSVIHSTQIDPSQQTNVQKLAEPSQQLKAAIVHLINY 122

  Fly   151 QDDAELATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSPQMVAALVRAISNSND 215
            ||||||||||||||.||||||||:||::|||:|:||::|||||.|:|.|||||||:|||:.|:.|
Zfish   123 QDDAELATRAIPELTKLLNDEDQLVVNKAAMIVNQLTRKEASRRALMQSPQMVAAVVRAMQNTTD 187

  Fly   216 LESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMA 280
            :|:|:|....||||||.|:|||||||||||||||::||||::|||||||||||||||||:|:|||
Zfish   188 METTRATASILHNLSHQREGLLAIFKSGGIPALVRMLSSPMDSVLFYAITTLHNLLLHQEGAKMA 252

  Fly   281 VRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLL 345
            ||||.|||:||.||:::|.|||||.|||||:|:||||||||||||:|||..||.|||:|:|||||
Zfish   253 VRLADGLQRMVPLLKKSNPKFLAITTDCLQLLSYGNQESKLIILANGGPEGLVNIMRTYNYEKLL 317

  Fly   346 WTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAATKVEGLEALL 410
            |||||||||||||.|||||||||||||||..||...|.||:||||||||||||||||.:|:|.||
Zfish   318 WTTSRVLKVLSVCPSNKPAIVDAGGMQALGKHLSGSSQRLMQNCLWTLRNLSDAATKQDGMENLL 382

  Fly   411 QSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVGGVDALVRTIINAGDREEITEPAVCA 475
            |.||.:|.:.|:|::|||.|:||||||||.|||..|.|..||:||:.||:.|..::::.||||||
Zfish   383 QVLVGLLSADDINMLTCATGVLSNLTCNNTRNKTQVTQSNGVEALIHTILRASSKQDVIEPAVCA 447

  Fly   476 LRHLTSRHVDSELAQNAVRLNYGLSVIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGA 540
            ||||||||.::|.||||||::||:..|||||:.|..||::|||:||||||||||||.||||:..|
Zfish   448 LRHLTSRHPEAETAQNAVRMHYGIPAIVKLLNQPYHWPVVKAVVGLIRNLALCPANQAPLRDADA 512

  Fly   541 IHHLVRLLMRAFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQ 605
            |..||.||.:|.||.::       .||....:|.|||||||||||..|||||:||:..||..|..
Zfish   513 IPKLVTLLSKAHQDAQK-------PGSSAQRSYQDGVRMEEIVEGCTGALHIMARDPMNRGTIAS 570

  Fly   606 QSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAA 670
            ...||:||:||::.::|::|||||||||||.||:.||||:.|||:.||.:||||.|||:||||||
Zfish   571 MDTIPLFVQLLYSPLDNVKRVAAGVLCELALDKQSAEIIDAEGASAPLMELLHSSNEGIATYAAA 635

  Fly   671 VLFRMSEDKPQDYKKRLSIELTNSLLREDNNIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSV 735
            ||:|.:|||..|||||:|:|||:||.:.|...|   ::.....:..:||.||    |.|.||   
Zfish   636 VLYRTAEDKNPDYKKRVSVELTHSLFKHDPEAW---EMAHNTVMDPVLGDEE----LDGYGP--- 690

  Fly   736 HSSHGGRA--FHQQGYDT---------LPIDSM 757
             :.:||.|  .|....|.         :|.:||
Zfish   691 -AGYGGYADGMHMDPLDPEMQDDFRSGMPYNSM 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 123/163 (75%)
armadillo repeat 161..186 CDD:293788 18/24 (75%)
armadillo repeat 193..231 CDD:293788 22/37 (59%)
armadillo repeat 238..270 CDD:293788 27/31 (87%)
armadillo repeat 278..314 CDD:293788 26/35 (74%)
armadillo repeat 320..355 CDD:293788 28/34 (82%)
Arm 361..398 CDD:278915 29/36 (81%)
armadillo repeat 362..397 CDD:293788 27/34 (79%)
armadillo repeat 410..435 CDD:293788 13/24 (54%)
Arm 439..481 CDD:278915 23/41 (56%)
armadillo repeat 443..481 CDD:293788 20/37 (54%)
armadillo repeat 490..525 CDD:293788 22/34 (65%)
Arm 597..636 CDD:278915 20/38 (53%)
armadillo repeat 600..636 CDD:293788 19/35 (54%)
armadillo repeat 641..675 CDD:293788 24/33 (73%)
jupaNP_571252.1 armadillo repeat 133..158 CDD:293788 18/24 (75%)
armadillo repeat 175..201 CDD:293788 13/25 (52%)
ARM 209..328 CDD:237987 96/118 (81%)
armadillo repeat 210..242 CDD:293788 27/31 (87%)
armadillo repeat 250..286 CDD:293788 26/35 (74%)
armadillo repeat 292..327 CDD:293788 28/34 (82%)
ARM 330..370 CDD:214547 31/39 (79%)
armadillo repeat 334..369 CDD:293788 27/34 (79%)
ARM 379..498 CDD:237987 72/118 (61%)
armadillo repeat 382..407 CDD:293788 13/24 (54%)
armadillo repeat 415..453 CDD:293788 20/37 (54%)
armadillo repeat 462..497 CDD:293788 22/34 (65%)
ARM 464..600 CDD:237987 81/142 (57%)
armadillo repeat 504..560 CDD:293788 32/62 (52%)
armadillo repeat 565..599 CDD:293788 17/33 (52%)
ARM 568..>645 CDD:237987 48/76 (63%)
armadillo repeat 607..637 CDD:293788 21/29 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592315
Domainoid 1 1.000 153 1.000 Domainoid score I4249
eggNOG 1 0.900 - - E1_COG0572
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D163964at33208
OrthoFinder 1 1.000 - - FOG0002078
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103992
Panther 1 1.100 - - O PTHR45976
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1754
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.710

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