DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arm and Pkp4

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:XP_036016888.1 Gene:Pkp4 / 227937 MGIID:109281 Length:1206 Species:Mus musculus


Alignment Length:897 Identity:191/897 - (21%)
Similarity:314/897 - (35%) Gaps:227/897 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SYMPAQNRTMSHNNQYNPPDLPPMVSA--KEQTL-------MWQQNSYLGDSGIHSGAVTQVPSL 57
            |.:|||.....::.:...|.....|.:  ..||.       .:|..:.:|.....:.|.|:|.|.
Mouse   263 STLPAQRAASPYSQRPASPTAVRRVGSVTSRQTSNPNGPVPQYQTTTRVGSPLTLTDAQTRVASP 327

  Fly    58 S----GKEDEEMEGDPLMFDLDTGFPQNF---TQDQVDDMNQ------------------QLSQT 97
            |    |....:..|       .|..||:.   .|..|.||:|                  .|:..
Mouse   328 SQGQVGSSSPKRSG-------MTAVPQHLGPSLQRTVHDMDQFGQQQYDIYERMVPPRPDSLTGL 385

  Fly    98 RS----------QRVRAAMFPETLEEGIEIPSTQFDP--QQPT--AVQRLSEPSQMLKHAVVNLI 148
            ||          |.:|:|:.|:.....|....|.:.|  :.|.  .|:.....:.:.:...|.:.
Mouse   386 RSSYASQHSQLGQELRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYRTGSVGIG 450

  Fly   149 NYQDDAELATRAIPELIKLLNDEDQVVVSQAAMMVH-----QLSKKEASRHAIMNSPQMVAALVR 208
            |.|       |...:...|....:...::.||....     |...:|.|    .|..|.......
Mouse   451 NLQ-------RTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQECS----YNRLQHTGPADD 504

  Fly   209 AISNSNDLESTKAAVGTLHNLSHHRQGLLAI----FKSGGIPALVKLLSSPVESVLFYAITTLHN 269
            ..:.|..::|.:....||..:.|..|..:..    ::...:|.::.:|.....||...|...|.:
Mouse   505 GATRSPSIDSIQKDPSTLKGVIHCLQTSVVFWEFAWRDPELPEVIHMLQHQFPSVQANAAAYLQH 569

  Fly   270 LLLHQDGSKMAVRLAGGLQKMVTLLQRNNVKFLAIVTDCLQILAYG--NQESKLIILASGGPNEL 332
            |....:..||.|...||::.:|.||....::........|:.|.:|  ..|:|:.:...||...|
Mouse   570 LCFGDNKVKMEVYRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPAL 634

  Fly   333 VRIMR-SYDYE------KLLWTTSRVLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCL 390
            :|::| |.|.|      .:||.       ||.|.:.|..|:    ..||:.....:   :|.:..
Mouse   635 LRLLRKSIDAEVRELVTGVLWN-------LSSCDAVKMTII----RDALSTLTNTV---IVPHSG 685

  Fly   391 WTLRNLSDAATKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQ--RNKATVCQVGGVD 453
            |...:..| ..|::...:|      ||.:|        .|.|.||:...:  |.:...|: |.||
Mouse   686 WNNSSFDD-DHKIKFQTSL------VLRNT--------TGCLRNLSSAGEEARKQMRSCE-GLVD 734

  Fly   454 AL---VRTIINAGDREEIT-EPAVCALRHLTSRHVDSELAQNAVRLNYGLSVIVKLL-------- 506
            :|   :.|.:|..|.:..| |..||.||:|:.| ::.|:.|  .|| .||:.:..||        
Mouse   735 SLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYR-LELEVPQ--ARL-LGLNELDDLLGKESPSKD 795

  Fly   507 HPPSRWPLIKAV------------IGLIRNLALCPANHAPLREHGAIHHLVRLLMRAFQDTERQR 559
            ..||.|...|..            :|.|..|:..|.....|.....:...:.||..         
Mouse   796 SEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAE--------- 851

  Fly   560 SSIATTGSQQPSAYADGVRMEEIVEGTVGALHILAR-----ESHNRALIRQQSVIPIFVRLLFNE 619
                   |..|:.          :||:.|:|..|:.     .::.||.:|::..:||.|.||..:
Mouse   852 -------SSNPAT----------LEGSAGSLQNLSAGNWKFAAYIRAAVRKEKGLPILVELLRMD 899

  Fly   620 IENIQRVAAGVLCELAADKEGAEIIEQ----------EGATGP--LTDLLHSRNEGVATYAAAVL 672
            .:.:....|..|..:|.|....|:|.:          .|..||  |:|      |.||....| |
Mouse   900 NDRVVSSVATALRNMALDVRNKELIGKYAMRDLVNRLPGGNGPSILSD------ETVAAICCA-L 957

  Fly   673 FRMSEDKPQDYK-------------------KRLSIELTNSLLREDNNIWANADLGM-----GPD 713
            ..::....::.|                   .|.|:::..:..:..|.:|...||..     |.:
Mouse   958 HEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWN 1022

  Fly   714 LQDMLGPEEAYEGLYGQGPPSVHSSHGGRAFHQQGYDTLPIDSMQGLEISSP 765
            ....:.|....|....:..||:.::      :||   ..||....|...|||
Mouse  1023 QNHFITPVSTLERDRFKSHPSLSTT------NQQ---MSPIIQSVGSTSSSP 1065

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 33/172 (19%)
armadillo repeat 161..186 CDD:293788 3/29 (10%)
armadillo repeat 193..231 CDD:293788 6/37 (16%)
armadillo repeat 238..270 CDD:293788 6/35 (17%)
armadillo repeat 278..314 CDD:293788 10/35 (29%)
armadillo repeat 320..355 CDD:293788 11/41 (27%)
Arm 361..398 CDD:278915 6/36 (17%)
armadillo repeat 362..397 CDD:293788 6/34 (18%)
armadillo repeat 410..435 CDD:293788 5/24 (21%)
Arm 439..481 CDD:278915 16/47 (34%)
armadillo repeat 443..481 CDD:293788 15/41 (37%)
armadillo repeat 490..525 CDD:293788 13/54 (24%)
Arm 597..636 CDD:278915 10/38 (26%)
armadillo repeat 600..636 CDD:293788 10/35 (29%)
armadillo repeat 641..675 CDD:293788 12/45 (27%)
Pkp4XP_036016888.1 Atrophin-1 72..>382 CDD:397323 25/125 (20%)
armadillo repeat 545..570 CDD:293788 6/24 (25%)
Arm 574..613 CDD:395413 9/38 (24%)
armadillo repeat 578..614 CDD:293788 10/35 (29%)
ARM 618..659 CDD:214547 13/47 (28%)
armadillo repeat 622..657 CDD:293788 11/41 (27%)
armadillo repeat 664..715 CDD:293788 14/72 (19%)
armadillo repeat 723..764 CDD:293788 15/41 (37%)
Arm 829..870 CDD:395413 11/66 (17%)
armadillo repeat 840..870 CDD:293788 9/55 (16%)
PLN03200 863..>984 CDD:215629 28/127 (22%)
ARM 880..915 CDD:214547 10/34 (29%)
armadillo repeat 882..914 CDD:293788 8/31 (26%)
armadillo repeat 921..962 CDD:293788 12/47 (26%)
ARM 964..1008 CDD:214547 4/43 (9%)
armadillo repeat 968..1003 CDD:293788 3/34 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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