DRSC/TRiP Functional Genomics Resources

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Protein Alignment arm and nmrk-1

DIOPT Version :9

Sequence 1:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_491763.1 Gene:nmrk-1 / 188966 WormBaseID:WBGene00020842 Length:340 Species:Caenorhabditis elegans


Alignment Length:260 Identity:47/260 - (18%)
Similarity:81/260 - (31%) Gaps:86/260 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 FPQNFTQDQVDDMNQQLSQTRSQRVRAAMFPET---LEEGIEIPSTQFDPQQPTAV----QRLSE 135
            |.:.|...:...:||.........|.....|:.   .:||.   ...||.::...:    ||:..
 Worm    26 FQRFFGAGETTIINQDEFYKTENEVEKIYHPDAEHLTDEGY---YWSFDEKEAINIDQFRQRILN 87

  Fly   136 PSQMLKHAVV--NLINYQDD-AELATR---------------------------------AIPEL 164
            .|::.|:.::  |:|...|: .:|..|                                 |.|..
 Worm    88 ESKVYKNVIIDGNMITEMDEIVDLCDRIVVMTLDFKTCKRRREARTDYVPADTPGYFVNVAFPAY 152

  Fly   165 IKLLNDEDQ----------VVVSQAAMMVHQLSKKEASRHAIMNSPQ-----------------M 202
            ::.|....|          :.||:        ||.:....:|:|..|                 :
 Worm   153 VRHLERARQRSRTDSRLTFIDVSE--------SKFDDKNKSIVNFRQQILDDHIKLTDEVIDVKV 209

  Fly   203 VAALVR-----AISNSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFY 262
            |..||.     |||..|.:.........:.|||:....|:|..|..||.|.::.....|:.:..:
 Worm   210 VDQLVSHPSCGAISTFNGVTRDNHGGRDVSNLSYDCHDLMAYKKLRGICAEIRAEYPDVKKIAIF 274

  Fly   263  262
             Worm   275  274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 31/179 (17%)
armadillo repeat 161..186 CDD:293788 5/34 (15%)
armadillo repeat 193..231 CDD:293788 12/59 (20%)
armadillo repeat 238..270 CDD:293788 6/25 (24%)
armadillo repeat 278..314 CDD:293788
armadillo repeat 320..355 CDD:293788
Arm 361..398 CDD:278915
armadillo repeat 362..397 CDD:293788
armadillo repeat 410..435 CDD:293788
Arm 439..481 CDD:278915
armadillo repeat 443..481 CDD:293788
armadillo repeat 490..525 CDD:293788
Arm 597..636 CDD:278915
armadillo repeat 600..636 CDD:293788
armadillo repeat 641..675 CDD:293788
nmrk-1NP_491763.1 NRK1 8..163 CDD:238982 23/139 (17%)
MoaE 205..332 CDD:238385 17/70 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0572
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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