DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and nsd1b

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:XP_005173940.1 Gene:nsd1b / 564592 ZFINID:ZDB-GENE-080519-2 Length:1873 Species:Danio rerio


Alignment Length:1942 Identity:341/1942 - (17%)
Similarity:580/1942 - (29%) Gaps:716/1942 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   853 EDQLARPVIPPVPTATQAAGSSSSSGSVATSTTTTTVASGGSSQQVATASATALPVSAVAITTPG 917
            ||:....|:.|.|.:........|:....|:|...|...|.|.::.:.|                
Zfish    37 EDEEEDEVMDPEPVSQPERNLCGSTSDCTTNTNLKTNLDGKSRRKNSKA---------------- 85

  Fly   918 VGGEAKLEQ--------KSD--------QPAAIMQNQ---SQNQAPPP----------------- 946
               .:.|||        |||        :|..::..|   |:.:|.||                 
Zfish    86 ---HSSLEQDVVFQDKAKSDSGLSTLVSRPGGVLMKQKKKSKTKALPPVKYLEGEVIWAKFNRRP 147

  Fly   947 --------------------PPPPQQQQ---------QQQLHQPQQ----------------LQP 966
                                ||....:|         ::|...|::                ::.
Zfish   148 WWPCQVIIHPLEGVYHKMKEPPDRTTRQYFLKTFGEPEEQAWVPERSTHIFVGGYQFNNLPFVKG 212

  Fly   967 SPHQ-VKQTVQIVSKE--TSFISGPVAAKTLVTEATSKPAELLPPPPYE-MATAPISNVTISIST 1027
            |.|| .:.|...:.|.  .|:.:..|||:.|:.|   ||....|...:: ::...|:|..|.:|.
Zfish   213 SGHQRDENTRHSIPKRFLNSWSASVVAAEALLLE---KPRVTSPSSAFKTISEETINNTEIKVSV 274

  Fly  1028 KQAAPKELQMKPKAVAM-----SLPMEQGDESLPE------QAEPPLHSEQGATAAGV-APHS-- 1078
            ....|....:...||..     |||..:..::..:      :....|:.|:|.....: :|:|  
Zfish   275 PVDLPNSSFLINGAVIQNNHLNSLPHNRKSKNKKKPTISHCRISEELNCEKGMIMDALDSPYSDI 339

  Fly  1079 -----------GGPLVSAQWTNNHLEGGVATTKIP-------------------FKPGEPQ---- 1109
                       ....:|..:..|:.:.....|.:|                   .|.|:.|    
Zfish   340 DSVPQIRRFPKSNEQISNHYVINYKQSSATPTVLPSTNDKDVKKNVENQGGLWFSKTGKGQVNGI 404

  Fly  1110 -----------------KRKLP----MHPQLD------------EKQIQQQAE-IPISTSLPTTP 1140
                             |.|:|    |.|:.:            :|.:.::.: :|.|:.|.|  
Zfish   405 SRAGIKSVNCSFGKVSCKIKMPDSASMKPKDNHNTGLEHLSTEAKKALDRRVKCLPASSRLMT-- 467

  Fly  1141 TGQGTPDKVQLISAI--ATYVKKSGVPNEAQ--------PIQNQSQGQVQMQAQMQATMQGHLSG 1195
                     :.:.|:  |.:.|:|....|.:        |....|.....:..|...|...| ..
Zfish   468 ---------RALKAMEDAEWTKESSSDLETKNCVSSFDSPSLETSDVHNSILLQKMPTAAIH-DL 522

  Fly  1196 QMSGQISGHA------------------------AGQIPAQMHLQVQHQ--------------LH 1222
            :...:||.||                        ..|.|...|...:.|              ||
Zfish   523 KEDSKISTHAKLSSELLCCKDDEHSVKSEDESSLVSQAPCAFHSSTRKQNSHVNDLSSSPTPSLH 587

  Fly  1223 MAVHPQQQQQQL--------HQNQPQN---------ATIPLPV---------TGQGAVPIPVPTM 1261
            :.:.......::        |..||.:         :|..:.:         .|...|..|:||.
Zfish   588 LNLKDMDNMNEISFKSLANEHSGQPLSFHPDSNYKFSTFLMMLKDMHDSREKDGNVLVVEPLPTT 652

  Fly  1262 E---------SKAGDQRKRRKREVQKPRRTNLNAGQAGG-------------ALKDLTGPLPAGA 1304
            |         |...|::...|::..||:...::......             :||..|..:.|  
Zfish   653 ELINEEPLLISDVKDEKATSKQKKVKPKTNVMSENHLASTISKTAQRSSKKISLKKKTTDIKA-- 715

  Fly  1305 MVQLAGMPPGTQYIQGAASGTGHVITSTGQGVTLGGVGASTGASSSPMLKKRVRKFSKVEEDHDA 1369
                     ...|.......:.|.:||.         .|.|..|:: :.|||.:||.:|.|.   
Zfish   716 ---------NIDYKSFDKLISAHRLTSK---------EAETNFSAN-VPKKRWQKFDQVSEK--- 758

  Fly  1370 FTEKLLTHIRQMQPLQVLEPHLNRNFHF-LIGSNETSGGGSPASMSSAASAGSSSAGGGKLKGGS 1433
                 ..||.:...:...|...:.|... :.|:|::...| |.:.|:|......:.         
Zfish   759 -----TVHIVEGNCIHKTERVSSENCDVSMDGTNKSCFFG-PETTSNALECNQGNC--------- 808

  Fly  1434 RGWPLSRHLEGLEDCDGTVLGRYGRVNLPGIPSLYDSERFGGSRGLVGGSARTRSPSPAESPGAE 1498
                  ::.|...:|                                   .|.|.||.......|
Zfish   809 ------QNTEAPTEC-----------------------------------KRIRKPSKRLIEWTE 832

  Fly  1499 KMLPMSSIQNDFYDQEFSTHMERNPRERLVRHIGAVKDCN---LETVDLVESEGVAAWATLPRLT 1560
            :           |||.||...:...:...|..|...| |:   .:|.|.|:.:        |::|
Zfish   833 E-----------YDQLFSAKKKAKKKPDSVTKIENQK-CSEPVAKTYDEVKQK--------PQVT 877

  Fly  1561 RYPGLILLNGNSRCHGRMSPVALPEDPLTMRFPVSPLLRSCGEELRKTQQMELGMGPLGNNNNNN 1625
                                    |..::.|.|                  ||...|..:     
Zfish   878 ------------------------EQDVSRRLP------------------ELQTPPPED----- 895

  Fly  1626 YQQKNQNVILALPASASENIAGVLRDLANLLHLAPAL---TCKIIEDKIGNKLEDQFMNQD---- 1683
             |.::..:|..||...|:.::      |..|...|.:   .|    |.|.|:  ||...|:    
Zfish   896 -QSQSTPLINTLPCQESQVLS------AETLTPPPEIIPSPC----DNISNR--DQLQRQNPVAV 947

  Fly  1684 -DEKHVDFKRPLSQVSHGHLRKILNGRRKLCRSCGNVVHATGLRVPRHSVPALEEQLPRLAQLMD 1747
             |...::.||.....     :|||.          :.:.|..:.:|:..:.::            
Zfish   948 GDSVCLNSKRQRKPT-----KKILE----------SSIEAEPILIPKRKMKSM------------ 985

  Fly  1748 MLPRKSVPPPFVYFCDRACFARFKWNGKDGQAEAASLLLQPAGGSAVKSSNGDSPGSFCASSTAP 1812
                            :.|.:....|                  |.|:..:..|.......|:.|
Zfish   986 ----------------KICSSGHSTN------------------SGVEQQSSKSKNKLSIESSDP 1016

  Fly  1813 AEMVVKQEPEDEDEKTPSVPGNPTNIPAQRKCIVKCFSADCFTTDSAPSGLELDGTAGAG-TGAG 1876
            ....:.:..|.|.:.:|:|                   .....|:||..|.:....:|:. |.:.
Zfish  1017 PSDPMLKSTEMEIDVSPAV-------------------LQTINTESADDGSDTLRCSGSQMTESS 1062

  Fly  1877 PVNNTVWETETSGLQLEDTRQ---------------CVFCNQRGD-----GQADGPSRLLNFDVD 1921
            ...:...|...|...|.|:|:               |..|.::||     ||..|.         
Zfish  1063 EFYSEREENSQSDKVLLDSRRLSEEKGGSTSVKENVCPMCEKQGDLLLCEGQCCGA--------- 1118

  Fly  1922 KWVHLNCALWSNGVYETVSGALMNFQTALQAGLSQACSACHQPGATI-KCFKSRCNSLYHLPCAI 1985
              .|..|    .|:.|..:|..:..:..  :|: .:|.||.:.|..: :|....|...||..||.
Zfish  1119 --FHPQC----TGLNEPPTGKFLCQECT--SGV-HSCFACKRLGEDVRRCMVPGCGKFYHGECAA 1174

  Fly  1986 REECVFYKNKSVHCSVHGHAHAGITMGAGAGATTGAGLGGSVADNELSSLVVHRRVFVDRDENRQ 2050
            ........|::..|.:|......|...|..          |||..:|:..:             :
Zfish  1175 SHAPTVPLNRAFRCPLHACLSCFILNPANP----------SVAKGQLTRCI-------------R 1216

  Fly  2051 VATVMHYSELSNLLRVGNMTFLNVGQLLPHQLEAFHTPH--------------YIYPIGYKVSRY 2101
            .....|.|:.  .:..|::|..:...:.|:..    ||.              ::...|..:...
Zfish  1217 CPVAYHSSDF--CIPAGSVTLTDSNIVCPNHF----TPRKGCRNHEHVNVSWCFVCSEGGSLLCC 1275

  Fly  2102 YWCVRRPNRRC--------RYICSIAEAGCKPEFRIQVQDAGDKEPEREFRGSSPSAVWQQILQ- 2157
            ..|....:|.|        .:.|:...||.||.::                    ..||.::.: 
Zfish  1276 ESCPAAFHRECLNIDMPEGSWYCNDCRAGKKPHYK--------------------EVVWVKVGRY 1320

  Fly  2158 -------------PITRLRKVHKWLQLFPQHISGEDLFGLTEPAIVRILESLPGIETLTDYRFKY 2209
                         |...||..|. :..||....|.:.:..|..|.|     .|.:|...:.:.|.
Zfish  1321 RWWPAEVSNPKDIPENILRMKHD-VGEFPVLFFGSNDYLWTYQARV-----FPYMEGDANSKEKM 1379

  Fly  2210 GRNPLLEFPLAINPSG----AARTEPKQRQLLVWRK------PHTQRTAGSCSTQRMANSAAIAG 2264
            |:.....:..|::.:.    ..:.|.:.|||...|:      |:.|........:.:..||.::.
Zfish  1380 GKGVDSTYKKALDEAALRFKELQAEKELRQLQEDRRNDKKPPPYKQIKVNKPFGKVLIISADLSE 1444

  Fly  2265 EVACP---------------YSKQFVHSKSSQYKKMKQEWRNNVYLARSKIQ---------GLGL 2305
            ...|.               .::..::....|.....:..:|..::.|...|         |.||
Zfish  1445 IPRCNCKATDENPCGMDSECINRMLLYECHPQVCPAGERCQNQCFIKRQYCQVETFRTLSRGWGL 1509

  Fly  2306 YAARDIEKHTMIIEYIGEVIRTEVSEIREKQYESKNRG-IYMFRLDEDRVVDATLSGGLARYINH 2369
            ....||:|...|.||:||||..|....|.|..:..|.| .||..||:||::||...|..||::||
Zfish  1510 RCVHDIKKGGFISEYVGEVIDEEECRARIKHAQENNIGNFYMLTLDKDRIIDAGPKGNEARFMNH 1574

  Fly  2370 SCNPNCVTEIVEVDRDVRIIIFAKRKIYRGEELSYDYKFDIEDESHKIPCACGAPNC 2426
            .|.|||.|:...|:.|.|:.:|:...|..|.||:::|..:..... |..|.|||.||
Zfish  1575 CCQPNCETQKWTVNGDTRVGLFSLTDIPAGTELTFNYNLECLGNG-KTVCKCGASNC 1630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136 25/109 (23%)
FYRN 2068..2118 CDD:283589 9/71 (13%)
FYRC 2126..2215 CDD:197781 16/102 (16%)
SET <2266..2431 CDD:225491 57/186 (31%)
SET 2291..2413 CDD:214614 48/131 (37%)
PostSET 2415..2431 CDD:214703 7/12 (58%)
nsd1bXP_005173940.1 PWWP 132..>204 CDD:321985 5/71 (7%)
TOP2c <652..1020 CDD:330395 91/588 (15%)
PHD_SF 1098..1140 CDD:328929 12/56 (21%)
PHD_SF 1145..1191 CDD:328929 12/45 (27%)
PHD_SF 1193..1245 CDD:328929 11/76 (14%)
PHD4_NSD1 1262..1301 CDD:277126 5/38 (13%)
WHSC1_related 1307..1401 CDD:99899 18/119 (15%)
AWS 1444..1494 CDD:197795 4/49 (8%)
SET 1497..1618 CDD:214614 45/120 (38%)
PHD5_NSD1 1668..1710 CDD:277129
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593791
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.870

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