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Protein Alignment trr and Setmar

DIOPT Version :10

Sequence 1:	NP_726773.2	Gene:	trr / 31149	FlyBaseID:	FBgn0023518	Length:	2431	Species:	Drosophila melanogaster
Sequence 2:	NP_001020219.1	Gene:	Setmar / 500281	RGDID:	1565882	Length:	315	Species:	Rattus norvegicus

Alignment Length:	277	Identity:	70/277 - (25%)
Similarity:	111/277 - (40%)	Gaps:	70/277 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly  2214 LLEFPLAINPSGAA-RTEPKQRQLLVWRKPH----------TQRTAGSCSTQRMANSAAIAGEVA 2267
            |...|:::.|.||. |.:|.|     :...|          ||.|...|:   ...:..:.|..:
  Rat    33 LENLPVSLWPLGAGPRPKPFQ-----YTPDHVAGPGVDMDPTQITFPGCA---CIKTPCVPGTCS 89

  Fly  2268 C-----PYSKQF-VHSKSSQYKKMKQEWRNNVYL-----ARSKI----------------QGLGL 2305
            |     .|:... :....|:.|..|..:..||..     .|:::                :|.||
  Rat    90 CLRHESNYNDNLCLRDVGSEAKYAKPVFECNVLCQCGEHCRNRVVQSGLQFLLQVFQTEKKGWGL 154

  Fly  2306 YAARDIEKHTMIIEYIGEVIRTEVSEIREK-QYESKNRGIYMFRLDE--------DRVVDATLSG 2361
            .....|.|...:.||.|||:  ..||::.: ..::.:...|:..|.|        :..||.|..|
  Rat   155 RTLEYIPKGRFVCEYAGEVL--GFSEVQRRIHLQTAHDPNYIIALREHTYNGQVMETFVDPTYIG 217

  Fly  2362 GLARYINHSCNPNCVTEIVEVDRDV-RIIIFAKRKIYRGEELSYDY------------KFDIEDE 2413
            .:.|::||||.||.:...|.:|..| ::.:||.:.|..||||||||            |..|:..
  Rat   218 NIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDILPGEELSYDYSGRFLNQISSKDKERIDCG 282

  Fly  2414 SHKIPCACGAPNCRKWM 2430
            ..:.||.|||.:|..::
  Rat   283 QPRKPCYCGAQSCATFL 299

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.