DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and pps

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster


Alignment Length:2126 Identity:368/2126 - (17%)
Similarity:653/2126 - (30%) Gaps:678/2126 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 SQSNPLLHRNTAFTSFTKKEGASSSASSSSSTASVISI-EPSGSGQDHAENSGKSEDLDYVLMPA 213
            :.||.::..:.:..||.::...:.....|.||.||:.| .|:.|..|..|:. :.|:|...:..|
  Fly    19 ADSNLVVVYSKSGISFDERAIGNIMEEKSISTISVVRITSPTPSMVDQEEDE-RLEELANFMETA 82

  Fly   214 SGADSSTSVGNSTGTGTPAGTPIGATTSTIILNANNGTAGVSGAGTTTILTQ--KSGHTNYNIFN 276
            :.::                           |:::||:.  ||....:.:.:  :..|...:..|
  Fly    83 TDSE---------------------------LDSDNGSQ--SGGDNASEMDEHDEENHNTGDDNN 118

  Fly   277 TTATGSQTPTTTLLNRVNLHPK-MKTQLMVNAKKLSEVTQTTAKVSIGNKTISVPLLKPLMSASG 340
            :.:|.::........||...|| :|.:.....|:..::.....:....:.|..: ::|..:..:|
  Fly   119 SDSTETEADAPRTRKRVGRKPKAIKKRKRRKPKERPQIVGLRVEQFYADNTADM-VVKNALKLAG 182

  Fly   341 AATAGGATIVESKQLLQPGGQVTTVMSAAQQSGGQQVHPHVHSHAHHNFTKLIKRGPKNSGTIVS 405
                                 |:.....|:.....:|..:.|::......:.:|...::....:.
  Fly   183 ---------------------VSVYKRTAETDALMEVIRNDHNYTPFTSPEQLKNHKRDEKMAME 226

  Fly   406 FSGLQIK-----PANTKIVATK---------VVSKKMLQLQQHQQQIQQQQQLQ-QLQV------ 449
            ......|     |.:.|::..|         .|..|:.:|.....|:||..||| ::|:      
  Fly   227 MQAQSRKIIMQAPGSVKLINAKKRVQAIPLSPVQVKVQRLPVKPHQVQQAAQLQPKVQLIRKPIH 291

  Fly   450 -------------TSGGGLAPPTGSIVTITTTNPSQTYAMVQDSATVGPAAHSE--DDAPAPRKI 499
                         .|......||.:.|.:... |.|.|....|.|....:|..|  |.|....::
  Fly   292 SPLPRQKPEIIANNSVNARLRPTRAPVKVIAP-PVQEYIEDDDDAQSSDSAEEENADKAYDSEEM 355

  Fly   500 TAYSENLQKILNKSKS-------QESTGGPEEFTNINSVV-------IKPLDKNTLNCPPS---- 546
            :..|:..|:..|...|       ..:...|.:...:..||       :|||..     ||:    
  Fly   356 SEESDEFQESDNDRDSDMDFDMRHSNRRNPNKRKRVRKVVRQTPSKPMKPLPP-----PPTTPQH 415

  Fly   547 FNIFKQQQ---HSQAAQSQSISAVGSGAGTPVTFTMASGNASDLATTSTVSV--SAGTICINSPM 606
            |...|:::   ..:|.|...|..:.:....|..|.:..|    |.:||.:.:  :..::.:..|.
  Fly   416 FPELKKRKEVLEPKAPQIGQIIQMPATKSVPAVFALGRG----LPSTSFLKIRPTHQSLPVKRPP 476

  Fly   607 MGTRPIISIQNKNI-------------------SLVLSKTTMAQQKPKMITTTTL--------SS 644
            :.|.|    .|.|:                   .::::| .||..|.......||        :.
  Fly   477 LPTTP----ANSNVRRMPAVQLGRIVNSPQEVKEIIINK-NMASPKGVFTNLNTLLGEDNNAATK 536

  Fly   645 QAALQMHHALIQDSSADKAGSSANSGSATSGASMQLKLTTANTPTKLSVSLAPD----------- 698
            .:.:.:.|..:...|..::..:............|     |:||:|..:.:..|           
  Fly   537 SSPVPLRHRAVMSPSTPRSSYNQQMSPIVVPVPAQ-----AHTPSKGFMPIGVDTAQSHKLPAQI 596

  Fly   699 VVKLEEVGSESKAK-------------------LLVKQEAVVKD-----------STGT------ 727
            |::..:..||..|:                   .||:|..|..|           ||..      
  Fly   597 VIETHQSSSELAAENDKQLDLINSIVQDELLKSTLVEQPVVNADEDIPKLVKMLESTAADLDPPP 661

  Fly   728 ---PTSEERAEE---IGTP-------------EKRLNANATMTAINQVQNQSANQIQMATSTSTA 773
               ||:...|.|   :|..             |..:.|:.....:..::.....:.::......:
  Fly   662 VSLPTNIFPAPEMQGVGNAAAADPNNIMDTANEDEITADFLQHVVGLIEEDKQFEAEVVKQVLAS 726

  Fly   774 SNPSTPNPTV----NATPMNNQRSAAEDNALLKQLLQNNS---SSHSLNQISIT-SAHVGSASAS 830
            :.|.|.:..|    :..|::..:..|..|     ||.|.|   .:.|:..:.|. |....|.:||
  Fly   727 TEPGTLDAIVSMPTSIEPVDVPQVQAHTN-----LLPNASLTEPAQSMTSLPIACSTPSRSVAAS 786

  Fly   831 APLSARKVINVRAPSMGKVRSLEDQLARPVIPPVPTATQAAGSSSSSGSVATSTTTTTVASGGSS 895
            .|.::.||:.    ..|:|..|.     |:..|...|.:.|...|:.|..|||::.....|.|.|
  Fly   787 TPPTSAKVVR----GYGRVIYLP-----PIEAPTTRAKRRAQFPSAPGMAATSSSDAGNLSFGES 842

  Fly   896 QQVATASATALPVSAVAITT---PGVG------GEAKLEQKSDQPAAIMQ-NQSQNQAPPPPPPP 950
            ...|:.:.   |::..:::.   ||.|      .|..:.::|..|....: :.|||.     .|.
  Fly   843 SLDASINQ---PLNTSSLSNDSQPGSGPKRPNPREPSMARRSTAPRRSKKLDASQNN-----DPD 899

  Fly   951 QQQQQQQLHQPQQL-----QPSPHQVKQTVQIVS------------------------------- 979
            ..:.|:....|.:|     ||..::......:..                               
  Fly   900 ASESQEDDDDPNKLWCICRQPHNNRFMICCDLCEDWFHGTCVGVTKAMGTDMENKGIDWKCPKCV 964

  Fly   980 KETSFISGPVAAKTLVTEATSKPAELLPPPPYEMATAPISNVTISISTKQAAPKELQM--KPKAV 1042
            |.....|.|.....|||..|::|.:..........||.|..|....:.::..|..|.:  .|..:
  Fly   965 KRQEERSQPRITDMLVTRPTTQPEQRPSETKVLTTTAEIVQVAAPSAPRRTLPVVLTVASSPMRI 1029

  Fly  1043 AMSLPMEQ----------------------------------------------GDESLPEQAEP 1061
            .|:.|.::                                              |:|.:.:.|:.
  Fly  1030 PMAKPAKKFPTGAISHQQQQQLNFIRLGPSPGKRISETLCVVCKRPASTSSVYCGEECIRKYAQS 1094

  Fly  1062 PLHSEQGATAAGVAPHSGGPLVSAQWTNNHLEGGVATTKIPFKPGEPQKRKLPMHPQLDEKQIQQ 1126
            .:.:.  |...|..|.:.|   :....||..:            .:..|:|     .|.|..::|
  Fly  1095 AIQAH--AATKGPLPQNAG---AQSLLNNSFD------------AKKNKKK-----DLFEDVLRQ 1137

  Fly  1127 QAEIPISTSLPTTPTGQGTPDKVQLISAIATYVKKSG--VPNEAQPIQNQSQGQVQMQAQMQATM 1189
                               .|.|..:..|..:.:|||  :.....|..:|.:..:|.....:...
  Fly  1138 -------------------ADTVSKVERINVFERKSGRVITGHMAPSAHQFRKWLQENPSFEVLP 1183

  Fly  1190 QGHLSGQ------MSGQISGHAAGQIPAQMHLQVQHQLHMAVHPQQQQQQLHQNQPQNATIPLPV 1248
            .|.:...      :.|......:...||        .|.:|..|.:...:|  :.|||.|:    
  Fly  1184 SGTVQSADAEKRLLKGAPEAATSTSEPA--------VLGVAKKPPEGPAKL--SHPQNTTV---- 1234

  Fly  1249 TGQGAVPIPVPTMESKAGDQRKRRKREVQKPRRTNLNAGQAG----GALKDLTGPL-----PAGA 1304
              |.:..:.:.::...|...:::....||.|....:.||:..    |..:.|...|     .|.|
  Fly  1235 --QASHQLGISSVRPLAKKDKEKTTPTVQAPTPNRIAAGKPEPVRIGIRRSLREQLLARIKEAQA 1297

  Fly  1305 MVQLAGMPPGTQYIQGAASGTGHVITSTGQGV------TLGGVGASTGASSSPMLKKRVRKFSKV 1363
            ..:.:|.|. ||:         ..:....|.|      .....|...||...  .|.|...|:..
  Fly  1298 AEENSGQPT-TQW---------PTVLEVDQFVKNVELEMFNSFGRDVGAKYK--AKYRSLMFNIK 1350

  Fly  1364 EEDHDAFTEKLLT------HIRQMQPLQVLEPHL-----NRNFHFL------------------- 1398
            :..:....||:..      .:.:|.|.|:....|     ..|.|.|                   
  Fly  1351 DRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLDMIKKSELDLLACAQNYVV 1415

  Fly  1399 ----------------------------IGSNETSGGGSPASMSSAASAGSSSAGGGKLK----- 1430
                                        ..:.:||....|::.:...|.....||..|.|     
  Fly  1416 KTHKGEEVIATKVDVTLPEENVSEASSMADTKQTSLVSEPSTSTLERSTSREKAGSSKEKRHKSH 1480

  Fly  1431 -----------GGSRGWPLSR-----HLEGLEDCDGTVLGRYGRVNLPGIPSLYDSERFGGSRGL 1479
                       ..|||..:.:     |.||.|.              ||     ..||...||  
  Fly  1481 KHHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQ--------------PG-----SGEREHRSR-- 1524

  Fly  1480 VGGSARTRS---PSPAESPGAEKMLPMSSIQNDFYDQEFSTHMERNPRERLVRHIGAVKDCNLET 1541
             ...:|.|.   |||         ||....:||           ::|    |....|.|......
  Fly  1525 -EKQSRERDEIVPSP---------LPKKRDEND-----------QSP----VPKKTAEKKTEASA 1564

  Fly  1542 VDLV----ESEGVAAWA--------------TLPRLTRYPG--------LILLNGNSRCHGRMSP 1580
            .:||    |||.....|              |||...:.|.        |..|..:|...|.:..
  Fly  1565 YNLVDQILESEKTVEQAANLGKPKPSPKPLPTLPSSLKAPEPMDNYSRYLHGLTTSSLWSGTLKM 1629

  Fly  1581 VALPEDPLTMRFPVSPLLRSCGEELRKTQQMELGMGPLGNNNNNNYQQK-----NQNVILA--LP 1638
            :.|.:..:.| :||.......|..:  ..||:: :|.:...|...|.:|     .:.|::.  .|
  Fly  1630 IDLADFEIVM-YPVQGNCHQLGNLM--PSQMDV-IGRITRVNVWEYIKKLKKSPTKEVVIVNIFP 1690

  Fly  1639 ASASE-----------------NIAGVLRDLANLLHLAPALTCKIIEDKIGNKLEDQFMNQDDEK 1686
            ||.||                 .:.||..|.....::.|..:        |:||.......:...
  Fly  1691 ASPSETYKFDLFFEYLDSRQRLGVLGVDSDQIRDFYIFPLGS--------GDKLPPALQTAEPVP 1747

  Fly  1687 -HVDFKRPLSQVSHGHLRKILNGRRKLCRSCGNVVHATGLRVPRHSVPALEEQLPRLAQLMDMLP 1750
             :.:.:||.:.:  |.:.:.|:.|.      .:.|.:|. .||. .||||..::.:.::.....|
  Fly  1748 FYEEAQRPNTLL--GIIVRCLSKRP------ADAVPSTP-SVPT-PVPALSSKVAKRSRSSISYP 1802

  Fly  1751 RKSVPPPFVYFCDRACFARFKWNGKDGQAEAASLLLQPAGGSAVKSSNGDSPGSFCASSTAPAEM 1815
            .:|.|        :...:....:.||.:.:..:::..|...               ...|||..:
  Fly  1803 AQSSP--------KRKISTHSTSSKDDEFDIDAIIKAPIAK---------------LQKTAPKVV 1844

  Fly  1816 VVKQEPED----------EDEKTPSVPGNPTNIPAQRKCIVKCFSA 1851
            .....|.|          :||..||.|..|.::..|...|.|..:|
  Fly  1845 PQPSVPNDADEPYSPGGSDDELVPSAPQRPNDLERQVNEINKQIAA 1890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513 23/139 (17%)
ePHD2_KMT2C_like 1898..2002 CDD:277136
FYRN 2068..2118 CDD:283589
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 23/145 (16%)
PHD_PHF3_like 914..963 CDD:277027 2/48 (4%)
BRK 1142..1186 CDD:197800 7/43 (16%)
TFIIS_M 1274..1396 CDD:284835 25/133 (19%)
SPOC 1623..1729 CDD:285043 21/109 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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