DRSC/TRiP Functional Genomics Resources

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Protein Alignment trr and MBD-R2

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:NP_731688.2 Gene:MBD-R2 / 41498 FlyBaseID:FBgn0038016 Length:1169 Species:Drosophila melanogaster


Alignment Length:997 Identity:198/997 - (19%)
Similarity:309/997 - (30%) Gaps:414/997 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   611 PIIS---IQNKNISL--VLSKTTMAQQ------------------KP----------KMITTTTL 642
            |||.   |:|..|||  .::|:.:...                  ||          ||.|....
  Fly    31 PIIRAIWIKNSRISLERQITKSVLVCSRHFRRLDFNTIRNGKYLLKPRVFPTVFPWGKMDTAEIE 95

  Fly   643 SSQAALQMHHALIQDSSADKAGSSANSGSATSGASMQLKLTTANTPTKLSVSLAPDVVKLEEVGS 707
            :.|.|||  ||.::       |::...|:|.|        :|.:...|.:|...  |.::....:
  Fly    96 ADQRALQ--HASVE-------GTTETPGNAQS--------STNDDVIKATVDQI--VAQILSESA 141

  Fly   708 ESKAKLLVKQEAVVKDSTGTPTSEERA------EEIGTPEKRLNANATMTAINQVQNQSANQIQM 766
            |.||....|......|...||.|.|.|      |..||| ...::.||:.|..            
  Fly   142 ERKATEEGKTGKAADDVKNTPESGEDANKAAAKEPSGTP-VAASSEATVPAPG------------ 193

  Fly   767 ATSTSTASNPSTP----NP---TVNATPMNNQRSAAEDNALLKQLLQNNSSSHSL-------NQI 817
            :.|:|.:..|.||    ||   |:.|   ..:..:.|.|.|..::::.|.:..:|       :::
  Fly   194 SASSSNSPLPGTPPKYSNPHNLTIGA---RLEALSVEGNWLPARIVEVNETEQTLLVRFERNHKL 255

  Fly   818 SITSAHVGS-------------------------------ASASAPL----SARKVI-------- 839
            .::.:..||                               |..|.|.    :.||::        
  Fly   256 KVSPSTSGSFQEWMAIKSERLRQRLSNRVLPVFELDEKCMARWSGPRKFPGTIRKLLGNDTYEVL 320

  Fly   840 -------NVRAPSMGKVRSLEDQLARPVIPPVPTATQAAGSSSSSGSVATSTTTTTVAS------ 891
                   ||||..|.|   :..||     |||..|.:  |:|.|...|.|..::..||.      
  Fly   321 FDDGYVKNVRAVHMNK---MPKQL-----PPVQVAEE--GASKSPTPVGTPVSSAPVAPKRASTG 375

  Fly   892 --GGSSQQVATASATALP---------VSAVAITTPGV-----GGEAKLEQKSDQ---------- 930
              ||||....:..:...|         ::::.|.:.|:     .||......:||          
  Fly   376 SLGGSSGSSGSKKSKCAPQRRDWPLLDMASLDIASLGLPEIPHDGEWTCHWVNDQPIGTEGFLIV 440

  Fly   931 -----PAAIMQN-------------------------------------------QSQNQA---- 943
                 |..|:|:                                           :|||..    
  Fly   441 GEHQKPTVIVQDWRLPPGWIKHMYQRSNVLGKWDVILVSPSGKRFRSKSDLKLFLESQNLVYNPD 505

  Fly   944 ------------------------PPPPPPPQQQQQQQLHQPQQLQPSPHQVKQTVQIVSKETSF 984
                                    |.|||.|:...........|...|.|.:..|...| ||:.:
  Fly   506 VYDFSIHRRRAKDINAYVYTHGYNPQPPPKPRPMDVSMNSTLDQSITSQHSLPSTPMPV-KESQY 569

  Fly   985 ISGPVAAKTLVTEATSKPAELLPPPPYEMATAPISNVTISISTKQAAPKELQMKPKAVAMSLPME 1049
            :..|||       :...||||:.|                    |..|.: :.|||..|..|...
  Fly   570 MEAPVA-------SLMPPAELMSP--------------------QTQPAD-ETKPKIEAEILEAS 606

  Fly  1050 QGDESLPEQAEPPLHSEQGATAAGVAPHSGGPLVSAQWTNN------------------------ 1090
            :|..|....|:|  |..:...|     ..||..|..|  :|                        
  Fly   607 EGGTSQLMLADP--HVVENGFA-----FIGGLKVKIQ--DNLYVCPREDCAKTYRKEDFLLIHIR 662

  Fly  1091 --------HLEGGVATTKIPFKPGEPQ---------KRKLP-------MHPQLDEKQI----QQQ 1127
                    |:.......::..|...|.         |.::|       ||.| |.:|.    :|.
  Fly   663 HYHKEFAEHVSHCPKMQELAVKRTHPSSIDQVEAVPKNQIPNQQFFAKMHQQ-DLQQSRSFKRQS 726

  Fly  1128 AEIPISTSLPT--TPTGQGTPDKVQLISAIATY---VKKSGVPNEAQPIQ--NQSQGQVQMQAQM 1185
            .....::|.|:  |||......|::..|...|.   :|:..|..:|.|.|  |.|..:...:|::
  Fly   727 VSATATSSTPSDITPTKALLSPKMEPPSVSPTVESGIKQEDVSLDAGPTQSFNPSLSRSCKRARL 791

  Fly  1186 QATMQGHLSGQMSGQ-------ISGHAAGQIPAQMHLQVQHQLHMAVHPQQQQQQLHQNQPQNAT 1243
            ..:.:...|.:.:.|       :|.:.||           |.|        .:|.:.:.: |:..
  Fly   792 SPSKRPSGSRKSNRQRSQRRPILSDNPAG-----------HGL--------TEQDVEETR-QSFN 836

  Fly  1244 IPLPVT-------GQGAVPIPVPTMESKA-GDQRKRRKREVQKPR---RTNLNAGQAGGALKDLT 1297
            .|.|.|       ..||...|:.:::|.| ||       .|..|.   :|::||..|        
  Fly   837 TPTPDTRIDSKKRRSGAATTPISSIDSPAMGD-------SVSTPSSNDQTDINAALA-------- 886

  Fly  1298 GPLPAGAMVQLAGMPPGTQYIQ 1319
             |.||..:.:      ..|||:
  Fly   887 -PPPAETLSK------APQYIK 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136
FYRN 2068..2118 CDD:283589
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
MBD-R2NP_731688.2 THAP 4..86 CDD:283206 11/54 (20%)
TUDOR 292..329 CDD:119391 5/36 (14%)
MeCP2_MBD 449..522 CDD:238690 5/72 (7%)
PHD_SF 919..963 CDD:304600
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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