DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and phf20l1

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:XP_009290756.1 Gene:phf20l1 / 327626 ZFINID:ZDB-GENE-030131-5837 Length:1116 Species:Danio rerio


Alignment Length:491 Identity:88/491 - (17%)
Similarity:176/491 - (35%) Gaps:96/491 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   490 EDDAPAPRKITAYSENLQKILNKSKSQESTGGPEEFTNINSVVIKPLDKNTLNCPPSFNIFKQQQ 554
            :||.....:........:|:.:....:|.:..|.|  .:.|.:.|...|              :|
Zfish   230 DDDDDGEEEEEEEDSESEKLADLDSEEEDSKPPAE--ELESAIAKRRSK--------------RQ 278

  Fly   555 HSQAAQSQSISAVGSGAGTPVTFTMASGNASDLATTSTVSVSAGTICINSPMMGTRPIISIQNKN 619
            .:|.:..:  |.:|.|||...|.|.......:|..|....|.:             |..|..::.
Zfish   279 GNQCSIKR--SRLGKGAGCADTETELKAETKELPVTPQQKVPS-------------PEPSPADEK 328

  Fly   620 ISLVLSKTTMAQQKPKMITTTTLSSQAALQMHHALIQDSSADKAGSSANSGSATSGASMQLKLTT 684
                 |::..||:     ||.:||:..|.:.....::..|.:.|.|..|:.:|...:.:.....|
Zfish   329 -----SQSVSAQK-----TTPSLSNPPACKARSRRLKHDSGESASSCQNTPAAPESSPLPSPTQT 383

  Fly   685 ANTPTKLSVSLAPDVVKLEEVGSESKAKLLVKQEAVVKDSTGTPTSEERAEEIGTPEKRLNANAT 749
            ....|..:.|.:|...:..: ...:.:.|:.......:|:...||.        .|:..|.|:..
Zfish   384 LPDSTHTAPSSSPQRRRRSQ-RLATTSDLICPPSPHTRDTATHPTP--------PPDGPLIADED 439

  Fly   750 MTAINQVQNQSANQI----QMATSTSTASNPSTPNPTVNATPMNNQRSAAEDN--ALLKQLLQN- 807
            .:.:.:.:..|...:    ..||||::|..|.|....:|....:|| :|.|.|  |::...:|. 
Zfish   440 SSTVVKTEAISQKPVSESPSTATSTASAQAPITEKEKMNDVLPSNQ-AALEGNSPAVVPAAIQKV 503

  Fly   808 -----NSSSHSLNQISITSAHVGSASASAPLSARKVI--------NVRAPSMGKV---------- 849
                 .::.|:...|      :.:..:..||:..:.|        ..:.....|.          
Zfish   504 PSRTPKANKHAREPI------INTKRSDDPLAPNECIIDLDHNKFKCKVSGCSKAFRKAKLLDYH 562

  Fly   850 ----RSLEDQLARPVIPPVPTATQAAGSSSSSGSVATSTTTTTVASGGSSQQVATASATALPVSA 910
                .:.|.::...|..|    .:...:.::|.|:.|| |.:.|......:.|:|:|:.:.....
Zfish   563 LKYYHNTEKEMDTEVCSP----EREGRTRATSASMPTS-TLSDVPDNKRRRTVSTSSSLSSQGFM 622

  Fly   911 VAITTPGVGGEAKLEQKSDQPAAIMQNQSQNQAPPP 946
            :.:.:.|....:|..:|....|::..:.::...|||
Zfish   623 LQMDSGGCVRPSKFCKKKRSSASMSSDSTEVSLPPP 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136
FYRN 2068..2118 CDD:283589
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
phf20l1XP_009290756.1 MBT 3..68 CDD:327428
TUDOR 121..165 CDD:119391
DUF3776 248..323 CDD:315317 20/105 (19%)
Atrophin-1 <312..510 CDD:331285 44/230 (19%)
PHD_PHF20L1 823..868 CDD:277103
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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