DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and lin-59

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:NP_491206.1 Gene:lin-59 / 266825 WormBaseID:WBGene00003040 Length:1312 Species:Caenorhabditis elegans


Alignment Length:1455 Identity:249/1455 - (17%)
Similarity:444/1455 - (30%) Gaps:523/1455 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   865 PTATQAAGSSSSSGSVATSTTTTTVASGGSSQQ---------------VATASATALPVSAVAIT 914
            ||.|.||.|:||||.     :.::..|||..||               :...:.|.  |.:.|..
 Worm    53 PTTTSAAASTSSSGG-----SNSSGGSGGHRQQGNILRIGNSIKIGDNILEPAGTL--VFSQADG 110

  Fly   915 TPGVGGEAKLEQKSDQPAAIMQNQSQNQAPPPPPPPQQQQQQQLHQPQQLQPSPHQVKQTVQIVS 979
            ||..|  .::.......|.:..|.......||....|..|...::||....|.......|....:
 Worm   111 TPWTG--QRIVVNGSTHAVVKANLFPIGTTPPVLNMQSNQNWYMNQPSGTVPMSSNAPATTSSAT 173

  Fly   980 KETSFISGPVAAKTLVTEATSKPAELLPPPPYEMATAPISNVTISISTKQA---APKELQMKPKA 1041
            .::...|.|          ||.|:     |.|.|    :::|.|.....:.   .|.:....|  
 Worm   174 PDSGIQSVP----------TSPPS-----PSYAM----MNDVDIGDHDDEEDDDGPADFTDMP-- 217

  Fly  1042 VAMSLPMEQGDE--SLPEQAEPPLHSEQGATAAGVAPHSGGPLVSAQWTNNHLEGGVATTKIPFK 1104
              :..|:::.|:  .:|            .|:.|..|::..|               |.|.||..
 Worm   218 --LLKPVDEDDDCYDVP------------CTSEGPPPNNSNP---------------AITTIPSS 253

  Fly  1105 ---PGEPQK--------------------------RKLPMH-PQL-------------DEKQIQQ 1126
               |..|::                          |:|..| |::             :|.:.::
 Worm   254 CSTPAPPKESLPTGMNVEEWGSFLIASNMDREEIVRRLMAHDPEMAKAIAMRIRELSAEESKKKK 318

  Fly  1127 QAEIPISTSLPTTPTGQG--TPDKVQLISAIATYVKKSGVPNEAQPIQNQSQGQVQMQAQMQATM 1189
            ..|..:|::.||||..:|  |.:|....|..:..|..|.:|.|.   ...:.|.|:....::   
 Worm   319 DMEAEVSSTTPTTPRARGTRTRNKCATRSTNSPDVTTSNLPEEP---STSTMGLVKENEDVE--- 377

  Fly  1190 QGHLSGQMSGQISGHAAGQIPAQ---MHLQVQHQLHMAVHPQQQQQQLHQNQ-PQNATIPLPVTG 1250
                      ::.|...|:.|.:   .|.:....|.......:.:|  |::. |:.:....|   
 Worm   378 ----------KVEGKRRGRKPKKRRGFHKESFEDLESDAKKSKAEQ--HEDHLPEASCSSRP--- 427

  Fly  1251 QGAVPIPV----------PTMESKAGDQRKRRKREVQKPRRTNLNA-----GQAG-------GAL 1293
            :..:|.||          ..||.|.....::...::.:.|.::|.:     |:.|       ..|
 Worm   428 ESVIPPPVDPIQFRLKVREMMERKLEQLTQKMSEDMTELRLSHLTSSKMVNGERGKRRESFLRQL 492

  Fly  1294 KDLTGPLPAGAMVQLAGMPPGTQYIQGAASGTGHVITSTGQGVTLGGVGASTGASSSPMLKKRVR 1358
            .:.:..|..|.|                                ||              :||:|
 Worm   493 NEQSKKLRKGGM--------------------------------LG--------------RKRLR 511

  Fly  1359 KFSK----VEEDHDAFTEKL--------------LTHIRQMQPLQVLEPH-----LNRNFHFLIG 1400
            .|..    :||:.|...:::              |...|..:|.:::.|.     .|..:..:..
 Worm   512 MFMTESDILEENKDNIKKEVKEESTPPPTKLRGRLPSRRTREPSEIVNPEPVEKKFNGEYFEITK 576

  Fly  1401 SNETSGGGSPASMSSAASAGSSSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRYGRVNLPGIP 1465
            |..:|....|..|:.:.:.|.:                    :|....|...|.|..||......
 Worm   577 SVPSSDDIIPLWMAPSLTCGCT--------------------KGACTSDMDCLNRALRVQCSSDC 621

  Fly  1466 SL--YDSERFG----GSRGLVGGSARTRSPSPAESPGAEKMLPMSSIQNDFYDQEFSTHMERNPR 1524
            |:  ..:.||.    |::..|....|::                         :...|.:.|...
 Worm   622 SVPYCSNRRFWKEDCGNKLCVSNGPRSK-------------------------RVLKTKIARRAG 661

  Fly  1525 ERLVRHIGAVKDCNLETVDLVESEGVAAWATLPRLTRYPGLILLNGNSRCHGRMSPVALPEDPLT 1589
            |.|..:.|       |.:...:::...|....||:......:.::...|     |.:|       
 Worm   662 EFLCEYAG-------EVITREQAQEKFAQDRDPRIIAIAAHLFVDATKR-----SNIA------- 707

  Fly  1590 MRFPVSPLLRSCGEELRKTQQMEL---------GMGPLGNNNNNNYQQKNQNVILALPASASENI 1645
             ||    :..||    :...::|:         |:..|.:.|.|                     
 Worm   708 -RF----IKHSC----KPNSRLEVWSVNGFYRAGVFALSDLNPN--------------------- 742

  Fly  1646 AGVLRDLANLLHLAPALTCKIIEDK-----IGNKLEDQFMNQDDEKHV-------DFKRPLSQVS 1698
            |.:..|.::||....|..|...|.|     :..:..|     .:||.|       :.::.:.:.|
 Worm   743 AEITVDKSDLLPFDMACNCGATECKRVIRGVRWRCAD-----PNEKIVTRRFVIRNRRKTIERSS 802

  Fly  1699 HGHLRKIL------NGRRKLCRSCGNVVHATGLRVPRHSVPALEEQLPRLAQLMDMLPRKSVPPP 1757
            |..|..||      |...:|  ....|:.|...||.:.........||....::..|..|...|.
 Worm   803 HSGLPAILQTPMDENSSIRL--KMKQVLAAFAFRVRKIDGSMSRTMLPHYTLIIKFLKTKGNNPN 865

  Fly  1758 FVYFCDRACFARFKWNGKDGQAEAASLLLQPAGGSAVKSSNGDSPGSFCASSTAPAEMVVKQEPE 1822
            .|.|.  :.|.::.....|...|.|.:.::               ..:.:||...:.:..|:..:
 Worm   866 PVEFV--SLFRKWLEAIDDDDLERAFVAIE---------------SHYMSSSILSSSLQSKKAKD 913

  Fly  1823 DEDEKTPSVPGNPTNIPAQRKCIVKCFSADCFTTDSAPSGLELDGTAGAGTGAGPVN----NTVW 1883
            :...........|:.:|::|             .|:..|.||         ...|:.    :..|
 Worm   914 NAPRARALSTSCPSPVPSKR-------------GDADLSYLE---------SLYPIGSYDPDDAW 956

  Fly  1884 ETETSGLQLEDTRQCVFCNQRGD------GQADGPSRLLNFDV-DKWVHLNCALW---------- 1931
            |:.::             |::|:      |..|....::..|. ..|:|::|..:          
 Worm   957 ESYST-------------NKKGNAVRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQK 1008

  Fly  1932 ------SNGVYETVSGALMNFQTALQAGLSQACSACHQPGATIKCFKSRCNSLYHLPCAIREECV 1990
                  .:|.|      :.:|.|..|.||        :|.|.:|        |...|....|.|.
 Worm  1009 SKNPPSDDGEY------ICDFCTNKQNGL--------RPSADVK--------LTEQPDVRFENCD 1051

  Fly  1991 FYK------------NKSVHCS-VHGHAHAGITMG-----AGA------------GATTGAGLGG 2025
            :|:            |::|:.: |....|..:...     .|:            .||:...:  
 Worm  1052 YYRSLINRRGIQVVLNETVYVNRVLPEDHKAMLRNLREEKKGSKQKDTNKYRFPKAATSPLPI-- 1114

  Fly  2026 SVADNELSSLVVHRRVFVDRDENRQVATVMHYSELSNLLRVGNMTFLNVGQLLPHQLEAFHTPHY 2090
            ...|.:.:.:....|:||....||.|        ..:.....:.|:.:.|::...: |.|.||:|
 Worm  1115 EKVDRKNARIFRVERLFVCPGNNRFV--------FGSFYAWPHETYADAGRVFSKK-EVFATPYY 1170

  Fly  2091 -IYPIGYKVSRYY------WCVRRP 2108
             ..|:...:.|..      ||..||
 Worm  1171 ETLPLDEVIGRCLVLDTATWCKGRP 1195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136 25/139 (18%)
FYRN 2068..2118 CDD:283589 13/48 (27%)
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
lin-59NP_491206.1 AWS 591..636 CDD:197795 10/64 (16%)
SET 638..748 CDD:214614 24/183 (13%)
PHD 970..1027 CDD:279022 10/62 (16%)
BAH_polybromo 1118..1222 CDD:240068 20/87 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.