DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and Phf3

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:NP_001074549.1 Gene:Phf3 / 213109 MGIID:2446126 Length:2025 Species:Mus musculus


Alignment Length:1996 Identity:384/1996 - (19%)
Similarity:601/1996 - (30%) Gaps:728/1996 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PKVTTSLGAAEKAKPERVASVAAAAFNAVSL--QKRSGDDTAT------PAEDPTRKKAKTELLL 60
            |:.:..|.|.|:.:..|.:::|..: ||.:|  :|.||...:|      |||   |.:.|.|:. 
Mouse   126 PRKSPRLMAQEQVRSLRQSTIAKRS-NAATLSTKKPSGKTLSTSKVGVKPAE---RCQGKEEVY- 185

  Fly    61 GTGTAAPSLPAKASSTAPQQLLYQRSGQQAK-----AQVKAASEPQDV----------------- 103
                      |...|..|::  .:|||:.|:     .:|.|:|....|                 
Mouse   186 ----------ASLKSEHPKE--SRRSGRHAEQMDVAPEVSASSVDSSVSSCAGMKEEAEFDPKHA 238

  Fly   104 --------------------ETADGVWDARDQQIIVC--------------------NFGSGTEM 128
                                ||:..|.:...:.::.|                    :..||...
Mouse   239 CNNQGEVNVPSPELDCPLLSETSASVEEKNIEALMECKAKTNSSPLFKFPVREDEQSDLVSGELN 303

  Fly   129 GAIKAEDA----DKQSEYRISTPRNSQSNPLLHRNTAFTSFTKKEGASSSASSSSSTASVISIEP 189
            ..|:.:||    |::|| .:..|.....             |.:|..||..||.|:.|:....|.
Mouse   304 DTIEGKDAGGKPDQESE-EVKFPCEGDQ-------------TAEEPESSDVSSDSACANKNKAEK 354

  Fly   190 SGSGQ------------DHAENSGKSEDLDYVLMPASGADSSTSVGNSTGT----------GTPA 232
            :...:            |..|||.:..:|:.:   ..|.|:.::......|          ...|
Mouse   355 NEGAECHLELKNTVDIVDKPENSPQRNELETL---GYGEDTESNDARLQSTEFNKSDLEEVDACA 416

  Fly   233 GTPIGATTSTIILNANNGTAGVSGAGTTTILTQKSGHTNYNIFNTTATGSQTPTTTLLNRVNLHP 297
            ..|..:|....|.:               :|.|.|...|........|.:.....:.|...|:.|
Mouse   417 FEPEASTLENTICD---------------VLDQNSKQLNITQSIKMETANLQDDRSGLEPKNIKP 466

  Fly   298 K-MKTQLMVNAKKLSEVTQT-----TAKVSIG-NKTISVPLLKPLMSASGAATAGGATIVESKQL 355
            | :|:   |...|.|..|:|     .||..:| :||.|  .:|.:...||.......:....|..
Mouse   467 KHIKS---VTHSKQSMTTETPRKTVAAKHEVGHSKTKS--NVKAVKRNSGEPEPQPDSQRPVKVR 526

  Fly   356 LQPGGQVTTVMSAAQQSGGQQVHPHVHSHAHHNFTKLIKRGPKNSGTIVSFSGLQIK-----PAN 415
            .:.|.:|....|.  .||.:.|....||        ::||.|::..|      :||.     |.:
Mouse   527 KKQGDKVWKSQSC--NSGVKSVKSQAHS--------VLKRMPQDQNT------MQISKPLTHPHS 575

  Fly   416 TKIVATKVVSKKMLQLQQ-----HQQQIQQQQQLQQLQVTSGGGLAPPTGSIVTITTTNPSQTYA 475
            .|:......||:.....|     |..|.|.|:..||..|..|.                     :
Mouse   576 DKLHGHSGFSKEPPHPVQTGHLVHSSQKQSQKPQQQAAVGKGS---------------------S 619

  Fly   476 MVQDSATVGPAAH-SEDDAPAPRKITAYSENLQKILNKSKSQESTGGPEEFTNINSVVIK----- 534
            .|:|......:.| .|||...|||   ...|||....:|....|...|..|...|...:|     
Mouse   620 HVKDEHDHPVSEHLKEDDKLKPRK---PDRNLQPRQRRSSRSFSLDEPPLFIPDNIATVKKEGSD 681

  Fly   535 ---PLDKNTLNCPPSFNIFKQQQHSQAAQSQSISAVGSGAGTPVTFTMASGNASDLATTSTVSVS 596
               .::...:..|.....|.::.|..                  .|.:..|...|......|.:|
Mouse   682 QTTSIESKYMWTPSKQCGFCKKPHGN------------------RFMVGCGRCDDWFHGDCVGLS 728

  Fly   597 AGTICINSPMMGTRPIISIQNKNISLVLSKTTMAQQKPKMITTTTLSSQAALQMH---------- 651
            ..    .:..||.      ::|....|.. .....:|..::.|....:||.::.|          
Mouse   729 LS----QAQQMGE------EDKEYVCVRC-CAEEDKKTDILDTEIFEAQAPIEAHSEDKRMECGK 782

  Fly   652 -----HALIQDS--SADKAGS--------SANSGSATSGA------SMQL----KLTTANTPTKL 691
                 ||:..|.  .:|..|.        .:..|..:|.:      ..||    ||:..:.|.:.
Mouse   783 LTSSKHAVTDDKHRHSDDPGKHKVKILKRESGEGKTSSDSRDNEIKKWQLAPLRKLSQPHLPRRS 847

  Fly   692 SVSLAPDVVKLEEVGSESKAKLLVKQEAVVKDSTGTPTSEERAEEIGTPEKRLNANATMTAIN-- 754
            |          ||           |.|.:.|:||...::.||....||.||:......|....  
Mouse   848 S----------EE-----------KSEKIAKESTALASTGERVARSGTHEKQETKKKKMEKGGPN 891

  Fly   755 -----QVQNQSANQIQMATSTS---------TASNPSTPNP------------------TVNATP 787
                 .....||:||:.:...|         |.||...|..                  ..:|..
Mouse   892 VHPPAATSKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKAAKVATKIEKELFSFFRDTDAKY 956

  Fly   788 MNNQRSA------AEDNALLKQLL-------------------------QNNSSSHSLNQIS--- 818
            .|..||.      .::|.|.|::|                         :...:.|::..|.   
Mouse   957 KNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 1021

  Fly   819 -------ITS-AHVG--SASASAPLSARK-VINVRAPSMGKVRSLEDQLARPVIPPVPTATQAAG 872
                   ||. .|.|  ...:.||:..:: .|.::.||..|  |:|.       |.|....:...
Mouse  1022 REVERRPITKITHKGEIEIESDAPMKEQEAAIEIQEPSANK--SMEK-------PDVSEKQKEEV 1077

  Fly   873 SSSSSGSVA------------------------TSTTTTTVASGGS---SQQVATASATALPVSA 910
            .|:|..:.:                        .|..|..|..||:   |...|.:.|.||    
Mouse  1078 DSTSKDTTSQHRQHLFDLNCKICIGRMAPPIDDLSPKTVKVVVGGARKHSDNEAESLADAL---- 1138

  Fly   911 VAITTPGVGGEAKLEQKSDQPAAIMQNQSQNQAPPPPPPPQQQQQQQLHQPQQLQPSPHQVKQT- 974
             :.||..:..:...|:|.:.|.:...         |.|.|:             .|...:|:.| 
Mouse  1139 -SSTTNILTSDLFEEEKQESPKSTFS---------PTPRPE-------------MPGTVEVESTF 1180

  Fly   975 ---VQIVSKETSFISGPVAAKTLVTEA---TSKPAELLPPPPYEMAT-APISNVTI---SISTKQ 1029
               :..:.|  .||:.|..|| .||:|   :..|..|....|..:.. ..||..|:   ....|.
Mouse  1181 LARLNFIWK--GFINMPSVAK-FVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKA 1242

  Fly  1030 AAPKELQMKPKAVAMSLPMEQGDE------------------------SLPEQAEPPLHSEQGAT 1070
            :..||:     .|....|:.:.|:                        .:.:....||      .
Mouse  1243 SGTKEI-----CVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPL------G 1296

  Fly  1071 AAGVAPHSGGPLVSAQWTNNHLEGGVATTKIPFK-PGEPQKRKLPMH-PQ-LDEKQIQQQAEIPI 1132
            ||...||   |||                  ||. ||      |.:| |. |....|:|:.:.|.
Mouse  1297 AADKIPH---PLV------------------PFDGPG------LELHRPNLLLGLIIRQKLKRPH 1334

  Fly  1133 STSLPTTPTGQGTPDKVQLISAIATYVKKSGVPNEAQPIQNQSQGQVQMQAQMQATMQGHLSGQM 1197
            |.|...:.||: ||:...::                  :....:|:::...:..|..:.......
Mouse  1335 SASAGPSHTGE-TPESAPIV------------------LPPDKKGKMESCTEEAAEEESDFFNSF 1380

  Fly  1198 SGQISGHAAGQIPAQMHLQVQHQLHMAVHP------QQQQQQLH---------QNQPQN---ATI 1244
            :..:  |.....|:|   .:|..|..|..|      |:..:.|.         .|||..   |..
Mouse  1381 TTVL--HKQRNKPSQ---PLQEDLPTAAEPLMEVTKQEPPKPLRFLPGVLIGWDNQPSTLELANK 1440

  Fly  1245 PLPV----------TGQ---GAVPI-------PVPTMESKAGDQRKRRKREVQKPRRTNLNAGQA 1289
            ||||          |||   .|.|:       .:|.:..:|..       :|:|..:..:..|.|
Mouse  1441 PLPVDDILQSLLGTTGQVYEQAQPLVEQSTLKEIPFINDQANP-------KVEKIDKVEVTEGDA 1498

  Fly  1290 GGALKDLTGPLPAGAMVQLAGMPPGTQYIQGAASGTGHVITSTGQGVTLGGVGASTGASSSPMLK 1354
                                      :.|:..|.... |.||...|.....||:|: .|..|:..
Mouse  1499 --------------------------KEIKVKAENIS-VSTSKNSGEETSSVGSSS-ISPGPLAS 1535

  Fly  1355 KRVRKFSKVEEDHDAFTEKLLTHI----RQMQPLQVLEPHLNRNFHFLIGSNETSGGGSPASMSS 1415
            ..:|     .:..|..||..||::    :|.:.::..|..|.|   .|:...|.       |:..
Mouse  1536 LSLR-----GKPPDVSTEAFLTNLSIPSKQEESVENKERTLKR---LLLQDQEN-------SLQD 1585

  Fly  1416 AASAGSSSAGGGKLKGGSRGWPLSRHLEGLEDCDGTVLGRYGRVNLPGIPSLYDSERFGGSRGLV 1480
            ..::..|....|..|||..|       :|.....|:..|..|.|.....|...:.:|  ..|...
Mouse  1586 NRTSSDSPCWPGTGKGGMDG-------DGSGSGSGSGSGSEGPVANTRAPQFINLKR--DPRQAA 1641

  Fly  1481 GGSARTRSPSP-----------------------AESPGAEKMLPMSSIQNDFYDQEFSTHMERN 1522
            |.|.:|.|.|.                       ||:.|.|..||         .||.|:.:|:|
Mouse  1642 GRSQQTASESKDAESCRNGDKHAASAPPHNKEPLAEAVGGEGKLP---------SQEKSSCVEQN 1697

  Fly  1523 ------PRERLVRHIGA------------VKDCNLETVDLVESEGVAAWATLPRLTRYPGLILLN 1569
                  |....|.::.:            |...|:|||.....      .:.|..:|:.|     
Mouse  1698 DDSEAAPNSSSVENLNSSQAEQANPSQEDVLTQNIETVHPFRR------GSAPTSSRFEG----- 1751

  Fly  1570 GNS-------------------RCHGRMSPVALPEDPLTMRFPVSP 1596
            ||:                   |.....||:. |:.|.......||
Mouse  1752 GNTCQSEFPSKSVSFTCRSSSPRASTNFSPMR-PQQPNLQHLKSSP 1796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513 29/163 (18%)
ePHD2_KMT2C_like 1898..2002 CDD:277136
FYRN 2068..2118 CDD:283589
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
Phf3NP_001074549.1 PHD_PHF3 697..747 CDD:277108 11/77 (14%)
TFIIS_M 904..1017 CDD:369395 16/112 (14%)
PHA03369 <983..1184 CDD:223061 39/236 (17%)
SPOC 1181..1327 CDD:369497 38/186 (20%)
SF-CC1 1916..>2025 CDD:273721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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