DRSC/TRiP Functional Genomics Resources

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Protein Alignment trr and C16A11.4

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:NP_494744.2 Gene:C16A11.4 / 173755 WormBaseID:WBGene00015817 Length:527 Species:Caenorhabditis elegans


Alignment Length:369 Identity:80/369 - (21%)
Similarity:134/369 - (36%) Gaps:90/369 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   930 QPAAIMQNQSQNQA-PPPPPPPQQQQQQQLHQPQQLQPSPHQVKQTVQIVSKETSFISGPVAAKT 993
            :|..:|.::||.:| ....|.|::.:::..:|...|:       :.::.:|:.:..||.|:|..|
 Worm    79 EPRLLMVSRSQARAYQGVEPEPREVRKKGRNQSVNLE-------EFLEFLSEASENISRPLALTT 136

  Fly   994 LVTEATSKPAELLPPPPYEMATAPI-SNV--TISISTKQAAPKELQMKPKAVAMSLPMEQGD--E 1053
            |..:...   .:..|....:....: ||:  |||:|....|.::.||   ..||.|.: :|:  |
 Worm   137 LFEDYKE---HINYPQSVRILRKQLESNLLETISMSPNYYADRKAQM---LFAMGLRV-KGEFLE 194

  Fly  1054 SLPEQA--------EPPLHSEQGATAAGVAPHSGG--PLVSAQWTNNHLEGGVATTKIPFKPGEP 1108
            .|...|        ....:..:.....|  .|..|  |||      |..:...:|::.....|| 
 Worm   195 RLERNAVVEVDGYHRITFYKSKNLEFRG--KHRVGRFPLV------NRRKSAESTSQQHGNSGE- 250

  Fly  1109 QKRKLPMHPQLDEKQIQQQAEIPISTSLPTT--------PTGQGTPDKVQLISAIATYVKKSGVP 1165
                            :...:|.|...:|.|        |..|..||:....||       |.:|
 Worm   251 ----------------EDDDDIFIDLVVPVTGNSRWNQFPVKQEIPDEQSFGSA-------STLP 292

  Fly  1166 N-EAQPIQNQSQGQVQMQA-----QMQATMQGHLSGQMSGQISG-HA--AGQIPAQMHLQ----V 1217
            | |.:|....|........     .|.||....:.|.|...::| ||  :...|....:|    |
 Worm   293 NAEIEPNLQYSLSDTMTTGSASTWNMAATPPSEMRGIMMESMNGLHALQSASYPPYQEMQEMLCV 357

  Fly  1218 QHQLHMAVHP-QQQQQQLHQNQPQNATIPLPVTGQGAVPIPVPT 1260
            ||.:..::|. .:.|...::...:...|      .||.|.|..|
 Worm   358 QHTMMKSMHEIIKTQSDFYREMFKTRAI------AGAPPAPATT 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136
FYRN 2068..2118 CDD:283589
FYRC 2126..2215 CDD:197781
SET <2266..2431 CDD:225491
SET 2291..2413 CDD:214614
PostSET 2415..2431 CDD:214703
C16A11.4NP_494744.2 PHD_SF 35..78 CDD:389947
SPK 117..221 CDD:367941 24/110 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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