DRSC/TRiP Functional Genomics Resources

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Protein Alignment trr and Setdb2

DIOPT Version :10

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:XP_038949803.1 Gene:Setdb2 / 100361710 RGDID:2319564 Length:1008 Species:Rattus norvegicus


Alignment Length:465 Identity:91/465 - (19%)
Similarity:147/465 - (31%) Gaps:129/465 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1585 EDPLTMRFP-------VSPLLRSCGEELRKTQQMELGMGPLGNNNNNNYQQKNQNVILALPAS-- 1640
            |.|.|...|       ..|::......:.:||:..:...|....:..:|.:||...:.:..|:  
  Rat   431 ESPKTEGCPPKFSSDLEEPVVEMNNRNISRTQRHSVIRRPKSKTDVFHYNEKNMGFVCSYSAAPE 495

  Fly  1641 -------ASENIAGVLR----DLANLLHLAPALTCKIIEDKIGNKLEDQFMNQDDEKHVDFKRPL 1694
                   |.|::....|    ||::              .::|.. ||:.:.:.|.......|..
  Rat   496 EKNGFKPAQEHLDSKARRAHEDLSS--------------SQVGYS-EDKQLTESDVIDTTTSRED 545

  Fly  1695 SQVSHG--HLRKILNGR--RKLCRSCGNVVHATGLRVPRHSVPALEEQLPRLAQLMDM------- 1748
            :..::|  | ..|||.:  :|:            |.||   |...:|:.|..:|...:       
  Rat   546 TSPAYGCKH-AAILNSKNTKKV------------LEVP---VKTSQEEEPAASQSQQVSCGEELA 594

  Fly  1749 LPRKSVPPPFVYFCDRACFARFKWNGKDGQAEAASLLLQPAGGSAVKSSNGDSPGSFCASSTAPA 1813
            ..|..:|...:.                 |....||.|       :.:|...:.|.|...|..|.
  Rat   595 SERTKIPSASLV-----------------QLSKESLFL-------LDASKEGNVGRFLNHSCYPN 635

  Fly  1814 EMVVKQEPEDEDEKTPSVPGNPTNIPAQRKCIVKCFSADCFTTDSAPSGLELDGTAGAGTGAGPV 1878
            ..|.....|..|...|                    .|..||.....:..||....|...|..|.
  Rat   636 LWVQNVFVETHDRNFP--------------------LAAFFTNRYVKARTELTWDYGYEAGTMPE 680

  Fly  1879 NNTVWETETSGLQLEDTRQCVFCNQRGDGQADGPSRLLNFDVDKWVHLNCALWSNGVYETVS--- 1940
            ...:.:......:..:.|.||.|.:..|......|...|..    .|.||.|:|:|:.|..:   
  Rat   681 KEILCQCFCQVTEKMEKRTCVLCPEGHDWSVIYFSPSANIA----AHENCLLYSSGLVECEAHDP 741

  Fly  1941 -GALMNFQTA-----LQAGLSQACSACHQPGATIKCFKSRCNSLYHLPCAIREECVF-------Y 1992
             ....||..:     :..|.:..||.|:..||.:.|.::.|...|||.||..:..:.       |
  Rat   742 FNIAKNFDVSSVLEKIWNGSTSKCSFCNNEGAIMGCDETSCAKNYHLLCAKEDRAILQVGVKRTY 806

  Fly  1993 KNKSVHCSVH 2002
            |   :.|..|
  Rat   807 K---IFCPEH 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
PRK13914 <623..>851 CDD:237555
ePHD2_KMT2C_like 1898..2002 CDD:277136 31/119 (26%)
FYRN 2067..2118 CDD:461787
FYRC 2126..2215 CDD:197781
SET_KMT2C_2D 2278..2430 CDD:380948
Setdb2XP_038949803.1 HMT_MBD 152..212 CDD:238689
SET 210..687 CDD:394802 58/330 (18%)
SET 365..>425 CDD:459965
PHD_SF 700..813 CDD:473978 31/119 (26%)
Blue background indicates that the domain is not in the aligned region.

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