DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trr and nsd3

DIOPT Version :9

Sequence 1:NP_726773.2 Gene:trr / 31149 FlyBaseID:FBgn0023518 Length:2431 Species:Drosophila melanogaster
Sequence 2:XP_005155379.1 Gene:nsd3 / 100006350 ZFINID:ZDB-GENE-050324-2 Length:1563 Species:Danio rerio


Alignment Length:1741 Identity:320/1741 - (18%)
Similarity:510/1741 - (29%) Gaps:715/1741 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   934 IMQNQSQNQAPPP--------PPPP-----QQQQQQQLHQPQQLQPSPHQVKQTVQIVSKETSFI 985
            ::|.:.|....||        |..|     |||||...|.|..|....|.               
Zfish   121 VVQEKPQTHISPPSHSHHHQQPHHPHHHHHQQQQQHHPHNPPLLPHHHHH--------------- 170

  Fly   986 SGPVAAKTLVTEATSKPAELLPPPPYEMATAPISNVTISISTKQAAPKELQMKPKAVAMSLPMEQ 1050
             .|..|..|:       .::|||||                                .:.||   
Zfish   171 -HPPPASHLM-------PQVLPPPP--------------------------------PLLLP--- 192

  Fly  1051 GDESLPEQAEPPLHSEQGATAAGVAPHSGGPLVSAQWTNNHLEGGVATTKIPFKPGEPQKRKLPM 1115
                    :.|||.|.|.:|.:       .|:                       |:        
Zfish   193 --------SSPPLLSPQESTIS-------NPI-----------------------GQ-------- 211

  Fly  1116 HPQLDEKQIQQQAEIPISTSLPTTPTGQGTPD-KVQLISAIATYVKKSGVPNEAQPIQNQSQGQV 1179
                           |::|.:.|||....:|: |:::|.   ||             ||..:   
Zfish   212 ---------------PVNTIITTTPKKTSSPEIKLKIIK---TY-------------QNGRE--- 242

  Fly  1180 QMQAQMQATMQGHLSGQMSGQISGHAAGQIPAQMHLQVQHQ------LHMAVHPQQQQQQLHQNQ 1238
                    ..:..|.|.:   :....||:...:.|.|.:.:      .|.|.|.:.||       
Zfish   243 --------LFESSLCGDL---LQEFQAGEDSRRQHEQKKEKRKKRGSRHGAGHEESQQ------- 289

  Fly  1239 PQNATIPLPVTGQGAVPI--PVPTMESKAGDQRKRRKREVQKPRRTNLNAGQAGGALKDLTGPLP 1301
                  |..|..:.:|.:  ||.|.||:..      .||.|:| :::|.:.:|  .||:      
Zfish   290 ------PSKVEEERSVVVHNPVQTTESQVA------FREEQQP-QSSLKSPKA--ELKE------ 333

  Fly  1302 AGAMVQLAGMPPGTQYIQGAASGTGHVITSTG--QGVTLGG-VGASTG--------ASSSPMLKK 1355
                             |........||||||  |...:|. |.|..|        .||.|....
Zfish   334 -----------------QKVEKHCPSVITSTGTSQEYEIGDLVWAKVGTYPWWPCMVSSDPQSNV 381

  Fly  1356 RVR-------------------------KFSKVEEDHDAFTE----------------KLLTHIR 1379
            ..|                         |.:.|.:..:.|.|                |||....
Zfish   382 HTRINTRGCKEYHVQFFGSVPERAWIHEKRTVVYKSENQFDELQAETLRKSTNPTEKQKLLKPQS 446

  Fly  1380 QMQ-------------PLQVLEPHLNRNFHFLI-----GSN-ETSGGGSPASMSSAASAGSSSAG 1425
            |.:             .||:.....|.|:.|:.     |:: ||:...:||. .||.:|.:.:..
Zfish   447 QKERAQWEVGVGHAEAALQMTREERNENYTFIYIDKEPGADAETAAAPAPAP-DSAPTAPTDTVT 510

  Fly  1426 GGKL---------------KGGSRGWPLSRHLEGLEDCDGTVLGRYGRVNLPGIPSLYDSERFGG 1475
            ..|.               ..|::..|:.|..:....|....:|.....| .|..::...:....
Zfish   511 SPKATAKNRPERKQRRSRGSAGAKEEPIPRRQQPRRQCSMNSVGETSSPN-QGEDAMEQEQPCSP 574

  Fly  1476 SRGLVGGSARTRSPSPA------ESPGAEKMLPMSSIQNDFYDQEFSTHMERNPRERLVRHIGAV 1534
            .:    .:.|.:.|||.      .:..|.|:||:|.                           .:
Zfish   575 PK----PAPRPKEPSPPPVRTPWRTAAARKLLPLSI---------------------------TM 608

  Fly  1535 KDCNLETVDLVESEGVAAWATLPRLTRYPGLILLNGNSRCHGRMSPVALPEDPLTMRFPVSPLLR 1599
            |..|:|.:.       ..| .||:                    ..|.||              :
Zfish   609 KKLNVEIIK-------CDW-QLPK--------------------QKVELP--------------K 631

  Fly  1600 SCGEELRKTQQMELGMGPLGNNNNNNYQQKNQNVILALPASASENIAGVLRDLANLLHLAPALTC 1664
            ....|.|.:.:::   .|.|::|.                                   |.|.||
Zfish   632 KTESEERPSSRVK---SPEGSSNK-----------------------------------AEAETC 658

  Fly  1665 KIIEDKIGNKLEDQFMNQDDEKHVDFKRPLSQVSHGHLRKILNGRRKLCRSCGNVVHATGLRVPR 1729
            ...|::..:.     ....|::|...::                             :|..:..|
Zfish   659 SSEEERAASP-----SGWSDQEHTSAEQ-----------------------------STERKQQR 689

  Fly  1730 HSVPALEEQLPRLAQLMDMLPRKSVPPPFVYFCDRACFARFKWNGKDGQAEAASLLLQPAGGSAV 1794
            .||.:..|.    .:.::.:|:|.|                    |..|||.|..:....|....
Zfish   690 RSVRSRSES----EKSVEPVPKKKV--------------------KKEQAETAPQMDFKTGSQKG 730

  Fly  1795 KSSNGDS--PGSFCASSTAPAEMV--VKQEPEDEDEKTPSVP----GNPTNIPAQRKCIVKCFSA 1851
            .|...||  |....:.::...||.  :.::..|.|.:..:.|    |..::.||       ...|
Zfish   731 ASEISDSCKPLKKRSRASTDVEMASSLYRDTSDSDSRGLNDPQTGFGKRSDSPA-------TVDA 788

  Fly  1852 DCFTTDSAPSGLELDGTAGAGTGAGPVNNTVWETETSGLQLEDTRQCVFCNQRGDG--QADGPSR 1914
            |.....|..|.|...|      |:....:||               |..|...||.  ..:|   
Zfish   789 DGSDAQSVDSSLSRQG------GSSSKKDTV---------------CHVCETFGDSLVSCEG--- 829

  Fly  1915 LLNFDVDKWVHLNCALWSNGVYETVSGALMNFQTALQ---AGLSQACSACH-QPGATIKCFKSRC 1975
                |.::..|..| :.||...|:        :|..|   .| |..|.:|. ..|...:|..:.|
Zfish   830 ----DCNRLFHPEC-MGSNSGKES--------ETVCQECKTG-SHPCFSCKVTEGDMKRCSVNGC 880

  Fly  1976 NSLYHLPCAIREECVFYKNKSVHCSVHGHAHAGI---TMGAGAGAT-----------TGAG--LG 2024
            ...||..|..:........|.:.|..|..|...:   ...||.|..           ||.|  ..
Zfish   881 GRYYHETCVRKYTGSASDTKGLRCPQHSCATCCLDRDLQKAGKGRMMRCIRCPVAYHTGDGCVAA 945

  Fly  2025 GSVADNELSSLVVHRRVFVDRDENRQVATVMHYSELSNLLRVGNMTFLNVGQLLPHQLEAFHT-- 2087
            |||.      :..|..:..:...:|:..   |:|...|:    ...|:....||.|.    ||  
Zfish   946 GSVL------ITPHIIICSNHSSSRKNG---HFSSPVNV----GWCFICARGLLVHD----HTDT 993

  Fly  2088 --------PHYIYP-----------------------IGYKVSRYYWCVRRP---NRRC------ 2112
                    .||:..                       || |..|...|...|   :..|      
Zfish   994 ILSSYTFKSHYLLTESNRAELMKLPMIPSSSSATKKNIG-KGGRLLCCEACPASFHPECLKIEMP 1057

  Fly  2113 --RYICSIAEAGCKPEFRIQVQDAGDKEPEREFRGSSPSAVWQQILQPITRLRKVHKWL------ 2169
              .::|...::|.||.::                    ..||.::..        ::|.      
Zfish  1058 EGTWLCGECKSGKKPHYK--------------------QIVWVKLGN--------YRWWPAEICN 1094

  Fly  2170 -QLFPQHI---------------SGEDLFGLTEPAIVRILESLPGIETLTDYRFKYGRNPLLE-F 2217
             :|.|.:|               ...|.:.:.:..:...:||        |..|..|:..:.: |
Zfish  1095 PRLVPSNIQSLKHDIGDFPVFFFGSHDYYWINQGRVFPYVES--------DKNFAEGQVGINKTF 1151

  Fly  2218 PLAINPSG------AARTEPKQR-------------QLLVWRKP--HTQRTAGSCSTQRMANSAA 2261
            ..|:..:.      .|:.|.|:.             :|:...||  ..|......|.....|...
Zfish  1152 KKALEEAAKRFQELKAQRETKEALEQERNSRRPPPYKLIKSNKPFGKVQLHVADLSEIPRCNCKP 1216

  Fly  2262 IAGEVACPYSKQFVHSKSSQY-----------KKMKQEWRNNVY----LARSKIQGLGLYAARDI 2311
             ..|..|....|.: ::..||           :...|.:...:|    :.::..:|.||...:|:
Zfish  1217 -TDERPCSQDSQCL-NRMLQYECHPQVCPAGDRCHNQCFSKRLYPDTEVIKTTGRGWGLKTKQDL 1279

  Fly  2312 EKHTMIIEYIGEVIRTEVSEIR-EKQYESKNRGIYMFRLDEDRVVDATLSGGLARYINHSCNPNC 2375
            :|...::||:||:|.:|..:.| ....|:.....||..|.:|||:||...|.|:|::||||:|||
Zfish  1280 KKGDFVMEYVGELIDSEECKQRIRTANENHVTNFYMLTLTKDRVIDAGPKGNLSRFMNHSCSPNC 1344

  Fly  2376 VTEIVEVDRDVRIIIFAKRKIYRGEELSYDYKFDIEDESHKIPCACGAPNC 2426
            .|:...|:.||||.:|....|....||:::|..|..... :..|.||:.||
Zfish  1345 ETQKWTVNGDVRIGLFTLCDISADTELTFNYNLDCLGNG-RTSCHCGSENC 1394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trrNP_726773.2 PHA03255 184..>320 CDD:165513
ePHD2_KMT2C_like 1898..2002 CDD:277136 25/109 (23%)
FYRN 2068..2118 CDD:283589 16/93 (17%)
FYRC 2126..2215 CDD:197781 12/110 (11%)
SET <2266..2431 CDD:225491 54/177 (31%)
SET 2291..2413 CDD:214614 44/126 (35%)
PostSET 2415..2431 CDD:214703 5/12 (42%)
nsd3XP_005155379.1 PWWP 351..468 CDD:321985 19/116 (16%)
PHD1_NSD3 813..856 CDD:277119 14/73 (19%)
PHD_SF 861..907 CDD:328929 10/45 (22%)
PHD3_NSD3 908..960 CDD:277125 11/57 (19%)
PHD4_NSD3 1033..1066 CDD:277128 6/32 (19%)
WHSC1_related 1072..1165 CDD:99899 15/128 (12%)
AWS 1208..1258 CDD:197795 7/51 (14%)
SET 1259..1382 CDD:214614 43/122 (35%)
PHD5_NSD3 1437..1479 CDD:277131
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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