DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14805 and wdr18

DIOPT Version :9

Sequence 1:NP_569954.1 Gene:CG14805 / 31146 FlyBaseID:FBgn0023514 Length:506 Species:Drosophila melanogaster
Sequence 2:NP_001032341.1 Gene:wdr18 / 496904 XenbaseID:XB-GENE-5818068 Length:428 Species:Xenopus tropicalis


Alignment Length:429 Identity:138/429 - (32%)
Similarity:230/429 - (53%) Gaps:28/429 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDAVEALFISTSSEDNTTCSVQDLRTGTDLMRYKGGGCAQHHSLNMIHLNYVMAANSAKPLLHV 65
            |...:|.:..:.::.....|:|.:..||:.|:.|:||. ..:..|.::...|::.|...|..::|
 Frog     1 MAAPMELVLSADATGQVANCTVWEPVTGSVLLTYRGGN-TSNRGLAVLGGQYLLGAQLGKNYINV 64

  Fly    66 WPINKQEQMAGLRFVVPGKVNALALTPDGNFLVAGIQENIYLWHMSSGRMLNTLSKHYQAITCLR 130
            |.:.:::|:. .:.|.||.||.||.:|:|.:||:||.|:||||.:.:||:|..|:.|||.:|||.
 Frog    65 WELQRRDQLQ-QKIVCPGPVNCLATSPNGLYLVSGIAESIYLWEVCTGRLLAILNNHYQDVTCLT 128

  Fly   131 FTDNGEHFISGGKDGAVLVWDLTFSAAPLDTGGGKDSTEPLYSFNDHGLAVTDLYSGIGGIRSYL 195
            |||:..|.|||.||..||||.| :|...::|..|   .||.|.::.|.|.:||:..||||.::.:
 Frog   129 FTDDSSHIISGAKDSLVLVWSL-YSVLQVETSRG---PEPRYVWSRHSLPITDVQCGIGGPQARV 189

  Fly   196 YTVSLDRCCKVYDLCGGVLLLSVVFPVALHSVIVSKMETRVYVGSSDGKVFVFNMENAPRMKEYH 260
            .|.|||:..|::::|.|.|||||:|.|.:.||.....|..::.|.|||.::..::...|..:|..
 Frog   190 VTSSLDQTVKLWEICSGDLLLSVLFDVRIMSVAFDPAEYHLFCGGSDGVIYQVDLYATPEQRERP 254

  Fly   261 LEGEEIQAFVGHTYGKAITCLALNISATTLVSGGEDNQVCVWDVGSRQLIKSLSQKGSVTNLHIR 325
            ...|:...|.||.  ..:|||::::..:.|:||..|..|||||:.|:|.:::::.:|.|||:.| 
 Frog   255 FHPEQEMVFKGHR--NQVTCLSVSLDGSMLISGSHDETVCVWDIHSKQCLRTVAHRGPVTNVFI- 316

  Fly   326 LLSPAIFLPEHKQPQMFADSLKRMISPWD-----ENDCIELFDPDYSGGRKTPELDYTQSHPGTD 385
            :.:|...|....:|........:.:...:     |:..:.|......|.|:...|...:.     
 Frog   317 IPAPGNILRAESKPSFPLPHFSKHLQGAEGCEGPESGGVILRLGKQQGSRENTYLQRAEQ----- 376

  Fly   386 EEIILKLIASMSSGKNEDDEGIEAETKATDVEDSEVEEE 424
                |:.:...|.|||.  .|:..:.::   ..||:|||
 Frog   377 ----LQSLLGESEGKNL--SGLVEQLRS---RTSELEEE 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14805NP_569954.1 WD40 <8..320 CDD:225201 113/311 (36%)
WD40 82..>322 CDD:295369 99/239 (41%)
WD40 repeat 86..121 CDD:293791 18/34 (53%)
WD40 repeat 126..162 CDD:293791 18/35 (51%)
WD40 repeat 172..219 CDD:293791 20/46 (43%)
WD40 repeat 224..270 CDD:293791 10/45 (22%)
WD40 repeat 278..315 CDD:293791 14/36 (39%)
WD40 repeat 319..363 CDD:293791 9/48 (19%)
wdr18NP_001032341.1 WD40 62..318 CDD:392136 105/263 (40%)
WD40 repeat 84..119 CDD:293791 18/34 (53%)
WD40 repeat 124..160 CDD:293791 19/36 (53%)
WD40 repeat 168..211 CDD:293791 17/42 (40%)
WD40 repeat 218..264 CDD:293791 10/45 (22%)
WD40 repeat 270..296 CDD:293791 11/25 (44%)
WD40_alt 381..428 CDD:372904 10/31 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I9214
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H32573
Inparanoid 1 1.050 231 1.000 Inparanoid score I3360
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D336315at33208
OrthoFinder 1 1.000 - - FOG0005072
OrthoInspector 1 1.000 - - oto104865
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R615
SonicParanoid 1 1.000 - - X5413
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

Return to query results.
Submit another query.