DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED18 and med18

DIOPT Version :10

Sequence 1:NP_569948.3 Gene:MED18 / 31140 FlyBaseID:FBgn0026873 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_593364.1 Gene:med18 / 2541925 PomBaseID:SPAC5D6.05 Length:207 Species:Schizosaccharomyces pombe


Alignment Length:129 Identity:28/129 - (21%)
Similarity:53/129 - (41%) Gaps:16/129 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVDLRR 103
            :::|.|.:..|:...|:.:  |.:|.::...:...       ....::..:.|...||.|.....
pombe    37 VVYRPKDVPPNLPRQPDSW--LRLCSNIESHDETD-------TEWSKNTQWSMYLEGNSEPKRED 92

  Fly   104 PTLVRSCMDCACTNG-ILEFLTEMGFRLEFEYIAKG--YMFRKGRMKITVSKLIKIVPGKQQDM 164
            ...:|.......||| :.||:.:||:....|||.:|  |.|    ...||.....::|.:|:.:
pombe    93 KCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFF----FDTTVRIYQTLIPSQQRSI 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED18NP_569948.3 Med18 24..209 CDD:462845 28/129 (22%)
med18NP_593364.1 Med18 2..203 CDD:462845 28/129 (22%)

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