DRSC/TRiP Functional Genomics Resources

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Protein Alignment prage and SDN1

DIOPT Version :10

Sequence 1:NP_001188528.1 Gene:prage / 31136 FlyBaseID:FBgn0283741 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_190579.2 Gene:SDN1 / 824172 AraportID:AT3G50100 Length:409 Species:Arabidopsis thaliana


Alignment Length:163 Identity:52/163 - (31%)
Similarity:90/163 - (55%) Gaps:8/163 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   687 ALDCEMSYTGRGLD-VTKVSLVALNGQLVYEHFVRPVCDIIDYNTQYSGITETDLCSGAKSLAEV 750
            |:||||.....|.: :.:|.:|..:.:::.:.||:|...::||.|..:|||..|:.:.:.|:.::
plant   142 AVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDI 206

  Fly   751 QRDLLQLITADTILIGHGLENDLRALRLVHNTLIDTSISFPHCNGFPYRR-ALRHLTKVHLKRDI 814
            |..|...::..|||:||.|..||..|::.|..:|||::.|.:.|....|| :|.:|.|..|..::
plant   207 QETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEV 271

  Fly   815 QAGDGTTG--HSSFEDSRACMELMLWRVNRELD 845
            :    .||  |....|:.|.|:|.|..|.:.:|
plant   272 R----KTGVPHDCVHDASAAMKLALAVVEKRVD 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prageNP_001188528.1 PH-like <614..650 CDD:473070
REX1_like 686..837 CDD:99848 49/153 (32%)
SDN1NP_190579.2 REX1_like 141..292 CDD:99848 49/153 (32%)
RRM_SF 317..377 CDD:409669
Blue background indicates that the domain is not in the aligned region.

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