DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prage and Rexo1

DIOPT Version :9

Sequence 1:NP_001188528.1 Gene:prage / 31136 FlyBaseID:FBgn0283741 Length:852 Species:Drosophila melanogaster
Sequence 2:XP_011241832.1 Gene:Rexo1 / 66932 MGIID:1914182 Length:1228 Species:Mus musculus


Alignment Length:682 Identity:186/682 - (27%)
Similarity:289/682 - (42%) Gaps:167/682 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 SSDATSEDIDSSSELPNKSKG--NSCAGSIHASGGSKSRSKRHQKQSGQQTRNPDHNGQRTGAAT 317
            |:...:||....:..|.|.|.  .:.||......|.|.|.. |..:.|:::..|    :||..|.
Mouse   616 STSVKTEDKGRLARQPPKEKAEEKTHAGLTTLFPGQKRRVS-HLCKPGKESEAP----KRTPVAP 675

  Fly   318 PC-----------TGQKAKQGNAKWRQQQPNPSSNNQQQQMQQQMQQQKRGRNKKPGKWSNNIID 371
            |.           ..|.|::.:|.|.|..|.|:.......:....::::...           :.
Mouse   676 PARPPTAQEVCYRRAQLAQRDSASWLQAAPRPTERLSSVHISAPGEKRRIAH-----------VP 729

  Fly   372 NPNSNHGGSSQQKTCDSSSSSAL------SSPTSSATTSATSSPTNSPTSYPRANGNRKRIEAAL 430
            ||......:..::...:|||.|.      |.|..:.|.|..:|.|.: |..|      |||..: 
Mouse   730 NPRLAAAPTGAKRALSASSSQASHGPEPGSQPLKTRTLSGMASKTTT-TVTP------KRIAHS- 786

  Fly   431 EWRREQELGRQNANFLVPPLRQYEQLEFDDKTVVQQLRRHIIDNHLLRVYGFPVDSVVHEGAIEI 495
                             |.|              |.|::.:|.    :.:|..|.:||.:..:.:
Mouse   787 -----------------PSL--------------QSLKKPVIP----KEFGGKVPTVVRQRYLNL 816

  Fly   496 F--KCMPHMSFAAALAETAQAVTVINYHDGLTNRAEEEVANST---------------------- 536
            |  :|:...|......|.|.....:.|....:......||.:|                      
Mouse   817 FIEECLKFCSSNQEAIEKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLVPNTVPNLSTFLYFL 881

  Fly   537 -DSGNSSPQSLDSESGGEWSGSECESSNSSSSSAGEAALGLELK-YCHFVPVERSL--------- 590
             ::......|.:...||:.:.....|.:..||...|     ||| ..|..|...:|         
Mouse   882 LEASGRRVVSHEVVLGGKLAAKTSFSLSRPSSPRVE-----ELKALTHSAPAGTALYSRLREYLL 941

  Fly   591 ----------------------------SKP-------CARCKRHFLVDELTGQYLTHEECQYHS 620
                                        .||       |.||...:||.. :|:.:..|||.||.
Mouse   942 TQEQLKENGYPFPHPERPGGAIIFTAEEKKPKDPSCRICCRCGTEYLVSS-SGRCVRSEECYYHW 1005

  Fly   621 GKYQRYYDGVSHG---RWTCCNEGEESSPGCCLGDRHVWSGSVVGVNGPYYDFVRTEHRGSGEDE 682
            |:.:|  :.|:.|   ::.||: ....|.||.:..:||..|....:.|    ||||..:...||.
Mouse  1006 GRLRR--NRVAGGWETQYMCCS-AAVGSVGCQVAKQHVQDGRKENLEG----FVRTFQKELPEDA 1063

  Fly   683 PA-VYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPVCDIIDYNTQYSGITETDLCSGAKS 746
            .| |:|||||||||..||::|:|::|..:.|:||:.||:|..:::||||::||:||.||...:.:
Mouse  1064 HAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTSIT 1128

  Fly   747 LAEVQRDLLQLITADTILIGHGLENDLRALRLVHNTLIDTSISFPHCNGFPYRRALRHLTKVHLK 811
            |.:||..||.:.:||||||||.||:||.||:::|.|::|||:.|||..|.||:|:||:|...:|:
Mouse  1129 LRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLR 1193

  Fly   812 RDIQAGDGTTGHSSFEDSRACMELMLWRVNRE 843
            :.||  |...||||.||:.|||.|::|::..:
Mouse  1194 QIIQ--DNVDGHSSSEDASACMHLVIWKIRED 1223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prageNP_001188528.1 PH-like <614..650 CDD:302622 14/38 (37%)
DnaQ 675..>837 CDD:223916 82/162 (51%)
REX1_like 686..837 CDD:99848 78/150 (52%)
Rexo1XP_011241832.1 PHA03307 150..>461 CDD:223039
EloA-BP1 794..969 CDD:374185 27/183 (15%)
REX1_like 1068..1216 CDD:99848 77/149 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002085
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103246
Panther 1 1.100 - - O PTHR12801
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2254
SonicParanoid 1 1.000 - - X1541
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.840

Return to query results.
Submit another query.