DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prage and rex3

DIOPT Version :9

Sequence 1:NP_001188528.1 Gene:prage / 31136 FlyBaseID:FBgn0283741 Length:852 Species:Drosophila melanogaster
Sequence 2:NP_594715.1 Gene:rex3 / 2542165 PomBaseID:SPAC1782.08c Length:540 Species:Schizosaccharomyces pombe


Alignment Length:574 Identity:139/574 - (24%)
Similarity:226/574 - (39%) Gaps:172/574 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 GGSSQQKTC----DSSSSSALSSPTSSATTSATSSPTNSPTSYPRANGNRKRIEAALEWRREQEL 438
            |...|.:.|    |..:|:.:|.|.|           .:...||:.     :||.:|.::.:   
pombe    19 GRKCQSRNCFFSHDFQNSTKISPPYS-----------ENVEGYPKV-----KIEKSLPYKYD--- 64

  Fly   439 GRQNANFLVP------PLRQYEQLEFDDKTVVQQLRRHIIDNHLLRVYGFPVDSVVHEG----AI 493
             ....:..||      |....|.|.|:       :|::|.....|......:....:|.    .:
pombe    65 -NCKLSICVPIVTTCIPYHSVENLNFN-------IRQNISTTLNLEKTNDSIKETKNENFRMDVL 121

  Fly   494 EIFKC------MPHMSFAAALAETA---QAVTVINYHDGLTNRAEEEVA----NSTDSGNSS--- 542
            |.:||      ..|:.....|.:.:   .|::::      .|:.::.|:    ||...|.||   
pombe   122 ETYKCKQLNHQTTHLPTNTVLKKRSLFNDAISIV------PNKKKQLVSAISTNSDSQGASSNII 180

  Fly   543 --PQ-SLDSESGGE-----------------WSGSE------------CESSNSS---SSSAGEA 572
              |: ..:|.:|.|                 :|.:|            ||::||.   |||....
pombe   181 PTPKYDSNSPAGHELRKRMTHLLYESYKDLGYSNAESSMLALLDEKNICETANSKMIYSSSCKSK 245

  Fly   573 ALGL--------------ELKYCHFVPVERSL------------------SKPCARCKRHFLVDE 605
            .|.|              :.|....|..|..|                  .:.|.||...| .| 
pombe   246 ILSLKKAPKKNEIQGSTPDEKLESLVHSEEELILWGYNIGDVAPVNPPDELRECDRCGTRF-AD- 308

  Fly   606 LTGQYLTHEECQYHSGKYQRYYDGVSHGR-WTCCNEGEESSPGCCLGDRHVWSGSVVGVNGPYYD 669
                  ....|.||.||..|...|....| :|||...|..|.||.:.|.||:....:    ||..
pombe   309 ------PRGPCTYHWGKLFREKQGGEKIRTYTCCGVKEGDSSGCIIEDNHVFKYRHL----PYLA 363

  Fly   670 FVRTEHRGSGEDEPAVY-------------ALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRP 721
            .|          .|..|             |||||:.||..|:::.::::|| ...::.:.|::|
pombe   364 SV----------HPFSYLPDSTNSKQLSHCALDCELCYTTNGMELARLTVVA-KESIIMDVFIKP 417

  Fly   722 VCDIIDYNTQYSGITETDLCSGAKSLAEVQRDLLQL-ITADTILIGHGLENDLRALRLVHNTLID 785
            ...|:..||::|||.:........::.::...:.:| :..:||||||||||||.|:||:|..:||
pombe   418 KGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVID 482

  Fly   786 TSISFPHCNGFPYRRALRHLTKVHLKRDIQAGDGTTGHSSFEDSRACMELMLWR 839
            |::.|.|..|.|:|.:|::|||.:|...||    |:.|.|.||:.:.::|:.::
pombe   483 TALLFTHARGPPFRYSLKYLTKKYLGTTIQ----TSTHDSEEDAVSALQLVFYK 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prageNP_001188528.1 PH-like <614..650 CDD:302622 15/36 (42%)
DnaQ 675..>837 CDD:223916 58/175 (33%)
REX1_like 686..837 CDD:99848 57/164 (35%)
rex3NP_594715.1 REX1_like 384..530 CDD:99848 56/150 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002085
OrthoInspector 1 1.000 - - otm47092
orthoMCL 1 0.900 - - OOG6_103246
Panther 1 1.100 - - O PTHR12801
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2254
SonicParanoid 1 1.000 - - X1541
TreeFam 1 0.960 - -
98.800

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