DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Adar and strbp

DIOPT Version :10

Sequence 1:NP_001368969.1 Gene:Adar / 31130 FlyBaseID:FBgn0026086 Length:681 Species:Drosophila melanogaster
Sequence 2:XP_012808670.1 Gene:strbp / 100135229 XenbaseID:XB-GENE-1005085 Length:734 Species:Xenopus tropicalis


Alignment Length:299 Identity:93/299 - (31%)
Similarity:129/299 - (43%) Gaps:72/299 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SCHHAMRVARSSFGYQRQQFYAASSYAGKRSRFFVKRRFTFPSLPGNPVS--APSDINMNGYNRK 77
            |..||:|:.  :||    |.|......              |.|...|..  :.|:.:..|.:.|
 Frog   369 SAQHALRLL--AFG----QIYKVLQMD--------------PLLSNKPFPKYSWSNSDREGSSLK 413

  Fly    78 LPQKRGYEMPKYSDPKKKMCKERI-----------PQPKNTVAMLNELRHGLIYKLESQTGPVHA 131
            .|...|....|  ||.||| |..:           .||.|.:..||::|.||.|||.||:|||||
 Frog   414 RPFDDGSCDEK--DPNKKM-KRNLRKVLDSKAIDSNQPMNALMRLNQIRPGLQYKLLSQSGPVHA 475

  Fly   132 PLFTISVEVDGQKYLGQGRSKKVARIEAAATALRSFIQFKDGAVLSPLKPAG--------NLDFT 188
            |:||:||:|||..:...|.|||.|::..|...|::...           |.|        :.|..
 Frog   476 PVFTMSVDVDGTTHEASGPSKKTAKLHVAVKVLQAMGY-----------PTGFDTDMECLSSDEK 529

  Fly   189 SDEHLEND-VSKSAITVDGQKKVPD----------------KGPVMLLYELFNDVNFECINIDGA 236
            ||...:|| |..|:..:.|.....:                |.|||.|.|....:.:|.|:..|.
 Frog   530 SDSEGKNDTVFSSSSNITGSSNADNNTLEVRTQGPILTASGKNPVMELNEKRRGLKYELISESGG 594

  Fly   237 QNNCRFKMTVTINEKKFDGTGPSKKTAKNAAAKAALASL 275
            .::.||.|.|.::.:||.|.||:||.||.:||.:||..|
 Frog   595 SHDKRFVMEVEVDAQKFRGAGPNKKVAKASAALSALEKL 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AdarNP_001368969.1 DSRM_STRBP_RED-like_rpt1 105..167 CDD:380694 31/61 (51%)
DSRM_SF 213..>259 CDD:444671 17/45 (38%)
ADEAMc 306..677 CDD:214718
strbpXP_012808670.1 DZF 140..393 CDD:128842 9/43 (21%)
DSRM_STRBP_rpt1 444..527 CDD:380738 35/93 (38%)
DSRM_ILF3_rpt2 565..634 CDD:380741 27/69 (39%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.