DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scgdelta and Sgcz

DIOPT Version :9

Sequence 1:NP_001162639.2 Gene:Scgdelta / 31129 FlyBaseID:FBgn0025391 Length:404 Species:Drosophila melanogaster
Sequence 2:NP_665840.2 Gene:Sgcz / 244431 MGIID:2388820 Length:311 Species:Mus musculus


Alignment Length:276 Identity:106/276 - (38%)
Similarity:163/276 - (59%) Gaps:12/276 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 LGLIGWRKKCLYTLLLLLMLLIITNLVLTLWILKVMEFSTEGMGQLKIVPGGIQLSGQAIIMDML 198
            :|:.||||:|||..:|||::.:|.||.:|:||||||.|:.:|||.|::...||:|.|.:..:..|
Mouse    39 VGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGIRLEGISEFLLPL 103

  Fly   199 RASTIRSRHGQPISIESSRNFSINTRDPNGMIENHLFLGHDKFECLSAGFRIN-DTNGRSLFSVN 262
            ....|.||...|:.::|.||.::|.|:..|.:...|.:|.:..|.....|.:. ..:||.|||.:
Mouse   104 YVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLTVGAEAVEAQCKRFEVRASEDGRVLFSAD 168

  Fly   263 RDEVTIGAHALRIDGEGGAVFRESVQTPHVRAEPGRELRLESPTRQLEMTAAKDINLQSRAGGIE 327
            .||:||||..|::.|..||||..||:|||:||||.::||||||||.|:|.|.:.:.:.:.||..:
Mouse   169 EDEITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLRLESPTRSLKMEAPRGVQVSAAAGDFK 233

  Fly   328 VVALEDVKFRALDGSLRLESSKILMPNLRTAQPPI---LGTAQSRDHMHRVFQLCACSNGKLFL- 388
            ....:::..::.:|.:.|.:..|.:.||     ||   ..:..|.:....|::||.|.||||:| 
Mouse   234 ATCRKELHLQSTEGEIFLNADSIRLGNL-----PIGSFSSSTSSSNSRQTVYELCVCPNGKLYLS 293

  Fly   389 -AAPHSICAGDDSTVC 403
             |...|.|. ..|::|
Mouse   294 PAGVGSTCQ-SSSSIC 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScgdeltaNP_001162639.2 Sarcoglycan_1 160..393 CDD:282624 88/238 (37%)
SgczNP_665840.2 Sarcoglycan_1 38..296 CDD:368120 101/261 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834474
Domainoid 1 1.000 208 1.000 Domainoid score I2851
eggNOG 1 0.900 - - E1_KOG3950
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3678
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52294
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001824
OrthoInspector 1 1.000 - - otm43061
orthoMCL 1 0.900 - - OOG6_106318
Panther 1 1.100 - - O PTHR12939
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3754
SonicParanoid 1 1.000 - - X1185
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

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