DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b6 and nptx1

DIOPT Version :10

Sequence 1:NP_477365.1 Gene:b6 / 31124 FlyBaseID:FBgn0024897 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001121479.1 Gene:nptx1 / 100158577 XenbaseID:XB-GENE-989880 Length:435 Species:Xenopus tropicalis


Alignment Length:212 Identity:52/212 - (24%)
Similarity:76/212 - (35%) Gaps:64/212 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 APKEPLAFPRSPVYGSDRCSVKKFAFNQDGEVEYGNPMPELDQFTICFWMRFTNHSG-------- 172
            |.|..|.||....|  ....|||             .:||:..||:|.|::.....|        
 Frog   228 ADKFQLTFPLRTNY--MYAKVKK-------------TLPEMYAFTVCMWLKSNASPGVGTPFSYA 277

  Fly   173 ----DHVLLTYEAGKEPREVQIWVANAQNSSFLSMAIKGQQMYRLNYPLKMRQWHHMCSSWNGKT 233
                .:.|:..|.|..|.|:.|                ..::.:|.:.:...:|||:|.:|..:.
 Frog   278 VPGQANELVLIEWGNNPMEILI----------------NDKVAKLPFVINDGKWHHICIAWTTRD 326

  Fly   234 GEWQAWLKAERIGRGFHNSLVGHKIPANGKL--------RSGGSSVT----GEVSHGLHFEM--- 283
            |.|:|:......|.| .|....|.|...|.|        ..||...|    ||::   ||.|   
 Frog   327 GVWEAYQDGILRGNG-ENLAPYHPIKHQGVLVLGQEQDTLGGGFDATQAFVGELA---HFNMWDR 387

  Fly   284 --TLVQVYRVALSAGKA 298
              |:.:||.:|....||
 Frog   388 KLTVGEVYNLATCTNKA 404

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
b6NP_477365.1 LamG 134..>264 CDD:473984 31/141 (22%)