DRSC/TRiP Functional Genomics Resources

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Protein Alignment dor and Vps18

DIOPT Version :9

Sequence 1:NP_477286.2 Gene:dor / 31118 FlyBaseID:FBgn0000482 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_758473.3 Gene:Vps18 / 228545 MGIID:2443626 Length:973 Species:Mus musculus


Alignment Length:1013 Identity:350/1013 - (34%)
Similarity:536/1013 - (52%) Gaps:94/1013 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SSGATANSYVATASGNPFETDDEDEIFSRHKMVLRVPSNCTGDLMHLAVSRNWLVCLLGTPERTT 83
            |.|...:.||:.      ..:.|..||::.    ||....:..:..|.||.|.|...||   :.|
Mouse    24 SVGIPHSGYVSA------HLEKEVPIFTKQ----RVDFTPSERITSLVVSCNQLCMSLG---KDT 75

  Fly    84 LLRFFLPRAIPPGEAVLEKYLSGSGYKITRMFLDPTGHHIIIALVPKSATAGVSPDFLYIHCLES 148
            |||..|.:|..|....|.:   ....|:.:||||.||.|:::||        .|.:.||::    
Mouse    76 LLRIDLGKASEPNRVELGR---KDDAKVHKMFLDHTGSHLLVAL--------SSTEVLYMN---- 125

  Fly   149 PQAQQLKVRRIEKFKDHEITAVAFNPYHGNESSTGPILLGTSRGLIFETELN--------PAADG 205
              ....|.|.:.::|...:.:|.:|...||||||||||:||::|.|||.||:        ||.| 
Mouse   126 --RNGQKARPLARWKGQLVESVGWNKAMGNESSTGPILVGTAQGQIFEAELSASEGGLFGPAPD- 187

  Fly   206 HVQRKQLYDLGLGRPKYPITGLKLLRVPNSSRYIIVVTSPECIYTF-----QETLKAEERSLQAI 265
             :..:.||.|.......|:..|:..|.|: .|..::.|:.:.::.|     ::|   |.:....:
Mouse   188 -LYFRPLYVLNEEGGPAPVCSLEAERGPD-GRGFVIATTRQRLFQFIGRAVEDT---EAQGFAGL 247

  Fly   266 FAGYVSGVQEPHCEERKTDLTFSQLRFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSAATLIGN 330
            ||.|..  ..|...|..::|.:|:|.|:.|.....|:.:||:.|:|:..|  |::.....:|:..
Mouse   248 FAAYTD--HPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYG--SLDCGRPDSLLSE 308

  Fly   331 TLINLDFEKTMHLSYGERRLNTPKAFVLTEYHAVLLYADHVRAICLLNQEQVYQEAFDEARVGKP 395
            ..:   :|....:..|   .|.|.|.|||::|.:||.||.|.|:|.|..:.|.::.|.| :.|..
Mouse   309 ERV---WEYPAGVGPG---ANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFLE-KFGPL 366

  Fly   396 LSIERDELTGSIYVYTVKTVFNLRVTREERNVWRIYLDKGQYELATAHAAEDPEHLQLVLCQRAD 460
            ..:.:|..||.::.||.:.||...|.||.|:|||.|||..:::||..:..|.|:.|..||.:.||
Mouse   367 RHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREAD 431

  Fly   461 AAFADGSYQVAADYYAETDKSFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELDEDKMN 525
            ..|....|..:|..||.|...|||:.|||:....:..:..:::::|:.:  ||.|..:       
Mouse   432 FCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL--KPTERTQ------- 487

  Fly   526 IIKALVIWLIDLYLIQINMPDKDEEWRSSWQTEYDEFMMEAHVLSCTRQ------NRETVRQLIA 584
             ...|..||.:|||.::.....|.:..:.::...:.|..   .||..|.      :|.::.:|:|
Mouse   488 -ATLLTTWLTELYLSRLGALQGDPDALTLYRDTRECFRT---FLSSPRHKEWLFASRASIHELLA 548

  Fly   585 EHADPRNMAQFAIAIGDYDEVVAQQLKAECYAEALQTLINQRNPELFYKYAPELITRLPKPTVDA 649
            .|.|..:|..||:.:.||:.|||...:.|.|.|||..|...|:|:||||::|.||..:|:..|||
Mouse   549 SHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDA 613

  Fly   650 LMAQGSRLEVEKLVPTLIIME---NREQREQTQRYLEFAIYKLNTTNDAIHNFLLHLYAEHEPKL 711
            .:..||||:..:|:|.|:...   ..:|..|..||:||.:..|..|..||||:||.|||..:|..
Mouse   614 WIEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGQPAS 678

  Fly   712 LMKYLEIQGRDESLVHYDIYYAHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETAS 776
            |:.|||..|.....||||:.||.::|.:.....|.|.:..:|..:..||||||..|:.|||:.|.
Mouse   679 LLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCAD 743

  Fly   777 RP-SDSKIRRKLWLRIAYHDIKGTNDVKKALNLLKECDLLRIEDLLPFFADFEKIDNFKEAICDA 840
            .| .|.::|:||||:||.|.::...||:.|:..|..|.||:|||:||||.||..||:||||||.:
Mouse   744 LPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASCPLLKIEDVLPFFPDFVTIDHFKEAICSS 808

  Fly   841 LRDYNQRIQELQREMAETTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHK 905
            |:.||..||||||||.|.|....|:..:||:||....|||.||.|..|:..||.:||::|:|||.
Mouse   809 LKAYNHHIQELQREMEEATASAQRIRRDLQELRGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHM 873

  Fly   906 FHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQ----AMELQRKRAALKT 966
            ||:|||.:.|.|.|...:..||..|:::|.|    ...|..|::..::    |..:...|..||.
Mouse   874 FHADCLLQAVRPGLPAYKQARLEELQRKLGA----APPPTKGSVKAKEAEAGAAAVGPSREQLKA 934

  Fly   967 EIEDILAADCLFCG-LLISTIDQPFVDD--WEQVNVEW 1001
            ::::::||:|::|| |:|.:||:||:|.  :|:.::.|
Mouse   935 DLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEHLSW 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dorNP_477286.2 Pep3_Vps18 311..464 CDD:282925 51/152 (34%)
CLH 650..797 CDD:128594 61/150 (41%)
Clathrin 654..783 CDD:279031 53/132 (40%)
Helo_like_N <828..889 CDD:305236 32/60 (53%)
RING 884..>914 CDD:238093 15/29 (52%)
Vps18NP_758473.3 Pep3_Vps18 291..434 CDD:282925 51/151 (34%)
CHCR 618..772 63/153 (41%)
Clathrin 638..769 CDD:279031 54/130 (42%)
CLH 644..768 CDD:128594 53/123 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834830
Domainoid 1 1.000 97 1.000 Domainoid score I7251
eggNOG 1 0.900 - - E1_KOG2034
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13302
Inparanoid 1 1.050 530 1.000 Inparanoid score I1206
Isobase 1 0.950 - 0 Normalized mean entropy S3729
OMA 1 1.010 - - QHG53523
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005153
OrthoInspector 1 1.000 - - oto94811
orthoMCL 1 0.900 - - OOG6_102656
Panther 1 1.100 - - LDO PTHR23323
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R896
SonicParanoid 1 1.000 - - X3676
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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